Analysis of interatomic Contacts of Structural Units in PDB entry:
1F6A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F6A entry

There are 3 chains in PDB entry 1F6A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 1PRO 173
B
PRO 328ASN 544
D
CYS 329ASN 544
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1F6A. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
59 63Right-handed 310
Helix 2
2
A
111 113Right-handed 310
Helix 3
3
B
332 336Right-handed 310
Helix 4
4
B
344 350Right-handed alpha
Helix 5
5
B
406 412Right-handed alpha
Helix 6
6
B
486 490Right-handed 310
Helix 7
7
B
513 519Right-handed alpha
Helix 8
8
D
344 350Right-handed alpha
Helix 9
9
D
406 412Right-handed alpha
Helix 10
10
D
486 490Right-handed 310
Helix 11
11
D
513 519Right-handed alpha
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There are 16 sheets in PDB entry 1F6A. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
7 10first strand
Strand 2
A
22 26anti-parallel
Strand 3
A
52 55anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
15 17first strand
Strand 2
A
79 84parallel
Strand 3
A
64 69anti-parallel
Strand 4
A
38 41anti-parallel
Strand 5
A
44 45anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
88 92first strand
Strand 2
A
103 109anti-parallel
Strand 3
A
125 130first strand
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
116 122anti-parallel
Strand 2
A
147 155anti-parallel
Strand 3
A
158 161anti-parallel
Strand 4
A
125 130first strand
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
116 122anti-parallel
Strand 2
A
147 155anti-parallel
Strand 3
A
165 169anti-parallel
Strand 4
A
96 97parallel
Strand 5
B
338 341first strand
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
355 363anti-parallel
Strand 2
B
397 404anti-parallel
Strand 3
B
388 391anti-parallel
Strand 4
B
373 376first strand
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
415 420anti-parallel
Strand 2
B
429 434anti-parallel
Strand 3
B
444 449first strand
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
459 469anti-parallel
Strand 2
B
503 512anti-parallel
Strand 3
B
491 492anti-parallel
Strand 4
B
444 449first strand
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
459 469anti-parallel
Strand 2
B
503 512anti-parallel
Strand 3
B
496 497anti-parallel
Strand 4
B
475 476first strand
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
526 527anti-parallel
Strand 2
B
536 537anti-parallel
Strand 3
B
522 523first strand
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
540 541anti-parallel
Strand 2
D
337 341first strand
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
355 363anti-parallel
Strand 2
D
397 404anti-parallel
Strand 3
D
388 391anti-parallel
Strand 4
D
372 376first strand
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
415 420anti-parallel
Strand 2
D
429 434anti-parallel
Strand 3
D
444 449first strand
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
459 469anti-parallel
Strand 2
D
503 512anti-parallel
Strand 3
D
491 492anti-parallel
Strand 4
D
444 449first strand
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
459 469anti-parallel
Strand 2
D
503 512anti-parallel
Strand 3
D
496 497anti-parallel
Strand 4
D
475 476first strand
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
522 527anti-parallel
Strand 2
D
536 541anti-parallel
Strand 3

0 0first strand
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il