Analysis of interatomic Contacts of Structural Units in PDB entry:
1FFY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FFY entry

There are 2 chains in PDB entry 1FFY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
T
G 1 C 74
A
MET 1VAL 917
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 1FFY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
3 7Right-handed 310
Helix 2
2
A
19 34Right-handed alpha
Helix 3
3
A
35 44Right-handed alpha
Helix 4
4
A
64 83Right-handed alpha
Helix 5
5
A
98 109Right-handed alpha
Helix 6
6
A
116 141Right-handed alpha
Helix 7
7
A
156 173Right-handed alpha
Helix 8
8
A
194 196Right-handed 310
Helix 9
9
A
219 223Right-handed 310
Helix 10
10
A
233 237Right-handed 310
Helix 11
11
A
268 273Right-handed alpha
Helix 12
12
A
332 337Right-handed alpha
Helix 13
13
A
368 373Right-handed alpha
Helix 14
14
A
374 378Right-handed 310
Helix 15
15
A
379 384Right-handed alpha
Helix 16
16
A
415 429Right-handed alpha
Helix 17
17
A
434 448Right-handed alpha
Helix 18
18
A
476 491Right-handed alpha
Helix 19
19
A
492 498Right-handed alpha
Helix 20
20
A
499 504Right-handed alpha
Helix 21
21
A
526 533Right-handed alpha
Helix 22
22
A
533 538Right-handed alpha
Helix 23
23
A
557 560Right-handed 310
Helix 24
24
A
561 575Right-handed alpha
Helix 25
25
A
605 613Right-handed alpha
Helix 26
26
A
614 624Right-handed alpha
Helix 27
27
A
634 658Right-handed alpha
Helix 28
28
A
663 668Right-handed alpha
Helix 29
29
A
670 674Right-handed 310
Helix 30
30
A
675 698Right-handed alpha
Helix 31
31
A
700 714Right-handed alpha
Helix 32
32
A
719 729Right-handed alpha
Helix 33
33
A
735 757Right-handed alpha
Helix 34
34
A
760 769Right-handed alpha
Helix 35
35
A
778 782Right-handed 310
Helix 36
36
A
791 818Right-handed alpha
Helix 37
37
A
823 825Right-handed 310
Helix 38
38
A
838 843Right-handed alpha
Helix 39
39
A
844 846Right-handed 310
Helix 40
40
A
848 853Right-handed alpha
Helix 41
41
A
906 915Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 1FFY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
52 53first strand
Strand 2
A
551 555parallel
Strand 3
A
581 585parallel
Strand 4
A
431 432parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
93 94first strand
Strand 2
A
152 153parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
191 192first strand
Strand 2
A
176 186anti-parallel
Strand 3
A
405 414anti-parallel
Strand 4
A
451 452anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
230 231first strand
Strand 2
A
198 209anti-parallel
Strand 3
A
388 397anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
454 455first strand
Strand 2
A
524 525anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
473 474first strand
Strand 2
A
466 467anti-parallel
Strand 3
A
519 520anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
588 589first strand
Strand 2
A
631 632parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
857 860first strand
Strand 2
A
827 832parallel
Strand 3
A
874 880anti-parallel
Strand 4
A
869 871anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
884 885first strand
Strand 2
A
892 893anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
897 899first strand
Strand 2
A
902 905anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il