Analysis of interatomic Contacts of Structural Units in PDB entry:
1FIE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FIE entry

There are 2 chains in PDB entry 1FIE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 9ARG 727
B
GLY 10ARG 727
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 1FIE. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
59 64Right-handed alpha
Helix 2
2
A
176 178Right-handed 310
Helix 3
3
A
198 206Right-handed alpha
Helix 4
4
A
234 244Right-handed alpha
Helix 5
5
A
249 251Right-handed 310
Helix 6
6
A
255 266Right-handed alpha
Helix 7
7
A
295 305Right-handed alpha
Helix 8
8
A
314 328Right-handed alpha
Helix 9
9
A
414 419Right-handed alpha
Helix 10
10
A
428 436Right-handed alpha
Helix 11
11
A
477 480Right-handed 310
Helix 12
12
A
488 500Right-handed alpha
Helix 13
13
A
591 594Right-handed alpha
Helix 14
14
B
59 64Right-handed alpha
Helix 15
15
B
111 113Right-handed 310
Helix 16
16
B
176 178Right-handed 310
Helix 17
17
B
198 204Right-handed alpha
Helix 18
18
B
234 244Right-handed alpha
Helix 19
19
B
255 264Right-handed alpha
Helix 20
20
B
295 305Right-handed alpha
Helix 21
21
B
314 327Right-handed alpha
Helix 22
22
B
414 419Right-handed alpha
Helix 23
23
B
428 436Right-handed alpha
Helix 24
24
B
478 481Right-handed alpha
Helix 25
25
B
488 500Right-handed alpha
Helix 26
26
B
515 517Right-handed 310
Helix 27
27
B
591 593Right-handed 310
Helix 28
28
B
595 597Right-handed 310
Helix 29
29
B
613 615Right-handed 310
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There are 23 sheets in PDB entry 1FIE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
74 77first strand
Strand 2
A
180 183parallel
Strand 3
A
155 157anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
47 52first strand
Strand 2
A
82 88anti-parallel
Strand 3
A
141 146anti-parallel
Strand 4
A
134 137anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
116 120first strand
Strand 2
A
99 104anti-parallel
Strand 3
A
158 164anti-parallel
Strand 4
A
169 171anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
209 216first strand
Strand 2
A
219 226anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
463 465first strand
Strand 2
A
332 338anti-parallel
Strand 3
A
372 380anti-parallel
Strand 4
A
391 395anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
349 354first strand
Strand 2
A
438 445parallel
Strand 3
A
449 456anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
518 524first strand
Strand 2
A
533 541anti-parallel
Strand 3
A
582 589anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
617 626first strand
Strand 2
A
603 612anti-parallel
Strand 3
A
547 557anti-parallel
Strand 4
A
566 577anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
554 558first strand
Strand 2
A
603 607anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
633 638first strand
Strand 2
A
645 653anti-parallel
Strand 3
A
688 696anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
676 680first strand
Strand 2
A
663 668anti-parallel
Strand 3
A
705 710anti-parallel
Strand 4
A
715 721anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
29 31first strand
Strand 2
B
168 171anti-parallel
Strand 3
B
158 165anti-parallel
Strand 4
B
99 104anti-parallel
Strand 5
B
116 120anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
74 77first strand
Strand 2
B
180 183parallel
Strand 3
B
155 157anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
47 52first strand
Strand 2
B
82 88anti-parallel
Strand 3
B
141 147anti-parallel
Strand 4
B
131 136anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
209 216first strand
Strand 2
B
219 226anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
474 476first strand
Strand 2
B
463 467anti-parallel
Strand 3
B
332 338anti-parallel
Strand 4
B
372 380anti-parallel
Strand 5
B
391 395anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
349 354first strand
Strand 2
B
438 445parallel
Strand 3
B
449 452anti-parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
518 524first strand
Strand 2
B
533 541anti-parallel
Strand 3
B
584 589anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
618 626first strand
Strand 2
B
603 611anti-parallel
Strand 3
B
551 558anti-parallel
Strand 4
B
566 573anti-parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
633 638first strand
Strand 2
B
645 653anti-parallel
Strand 3
B
688 696anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
676 680first strand
Strand 2
B
663 668anti-parallel
Strand 3
B
701 710anti-parallel
Strand 4
B
715 725anti-parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
275 277first strand
Strand 2
A
309 312parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
275 277first strand
Strand 2
B
309 312parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il