Analysis of interatomic Contacts of Structural Units in PDB entry:
1FMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FMK entry

There are 2 chains in PDB entry 1FMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 82GLN 526
A
 GLN 528LEU 533
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1FMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
134 136Right-handed 310
Helix 2
2
A
143 145Right-handed 310
Helix 3
3
A
155 162Right-handed alpha
Helix 4
4
A
223 230Right-handed alpha
Helix 5
5
A
264 266Right-handed 310
Helix 6
6
A
304 316Right-handed alpha
Helix 7
7
A
346 350Right-handed alpha
Helix 8
8
A
352 357Right-handed alpha
Helix 9
9
A
360 379Right-handed alpha
Helix 10
10
A
389 391Right-handed 310
Helix 11
11
A
396 398Right-handed 310
Helix 12
12
A
426 428Right-handed 310
Helix 13
13
A
431 436Right-handed alpha
Helix 14
14
A
441 456Right-handed alpha
Helix 15
15
A
468 476Right-handed alpha
Helix 16
16
A
489 498Right-handed alpha
Helix 17
17
A
503 505Right-handed 310
Helix 18
18
A
509 517Right-handed alpha
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There are 5 sheets in PDB entry 1FMK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
84 88anti-parallel
Strand 3
A
137 139anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 122first strand
Strand 2
A
129 133anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 176first strand
Strand 2
A
184 192anti-parallel
Strand 3
A
196 204anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 329first strand
Strand 2
A
334 338anti-parallel
Strand 3
A
290 297anti-parallel
Strand 4
A
281 286anti-parallel
Strand 5
A
267 272anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 394first strand
Strand 2
A
400 402anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il