Analysis of interatomic Contacts of Structural Units in PDB entry:
1FNF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FNF entry

There is 1 chain in PDB entry 1FNF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 1142THR 1509
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 1FNF


There are 8 sheets in PDB entry 1FNF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1150 1153first strand
Strand 2
A
1160 1163anti-parallel
Strand 3
A
1200 1202anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1190 1194first strand
Strand 2
A
1174 1181anti-parallel
Strand 3
A
1211 1219anti-parallel
Strand 4
A
1228 1233anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1243 1245first strand
Strand 2
A
1252 1255anti-parallel
Strand 3
A
1291 1294anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1319 1324first strand
Strand 2
A
1302 1310anti-parallel
Strand 3
A
1266 1273anti-parallel
Strand 4
A
1276 1285anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1334 1336first strand
Strand 2
A
1342 1346anti-parallel
Strand 3
A
1381 1385anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1371 1376first strand
Strand 2
A
1356 1362anti-parallel
Strand 3
A
1392 1400anti-parallel
Strand 4
A
1409 1414anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1471 1474first strand
Strand 2
A
1432 1436anti-parallel
Strand 3
A
1424 1429anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1461 1466first strand
Strand 2
A
1446 1453anti-parallel
Strand 3
A
1483 1490anti-parallel
Strand 4
A
1503 1507anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il