Analysis of interatomic Contacts of Structural Units in PDB entry:
1FPI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FPI entry

There are 2 chains in PDB entry 1FPI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 9ALA 335
B
 ASN 9ALA 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1FPI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 23Right-handed alpha
Helix 2
2
A
29 48Right-handed alpha
Helix 3
3
A
53 56Right-handed alpha
Helix 4
4
A
73 88Right-handed alpha
Helix 5
5
A
123 128Right-handed 310
Helix 6
6
A
149 151Right-handed 310
Helix 7
7
A
156 158Right-handed 310
Helix 8
8
A
213 218Right-handed 310
Helix 9
9
A
221 231Right-handed alpha
Helix 10
10
A
248 258Right-handed alpha
Helix 11
11
A
281 290Right-handed alpha
Helix 12
12
A
302 304Right-handed 310
Helix 13
13
A
321 333Right-handed alpha
Helix 14
14
B
13 24Right-handed alpha
Helix 15
15
B
29 48Right-handed alpha
Helix 16
16
B
53 55Right-handed 310
Helix 17
17
B
73 88Right-handed alpha
Helix 18
18
B
149 151Right-handed 310
Helix 19
19
B
156 158Right-handed 310
Helix 20
20
B
213 218Right-handed 310
Helix 21
21
B
221 231Right-handed alpha
Helix 22
22
B
248 258Right-handed alpha
Helix 23
23
B
281 290Right-handed alpha
Helix 24
24
B
302 304Right-handed 310
Helix 25
25
B
321 333Right-handed alpha
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There are 4 sheets in PDB entry 1FPI. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
113 118parallel
Strand 3
A
132 140anti-parallel
Strand 4
A
161 167anti-parallel
Strand 5
A
171 177anti-parallel
Strand 6
A
180 187anti-parallel
Strand 7
A
192 197anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 264first strand
Strand 2
A
316 319anti-parallel
Strand 3
A
294 296anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 96first strand
Strand 2
B
113 118parallel
Strand 3
B
132 140anti-parallel
Strand 4
B
161 167anti-parallel
Strand 5
B
171 177anti-parallel
Strand 6
B
180 187anti-parallel
Strand 7
B
192 197anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 264first strand
Strand 2
B
316 319anti-parallel
Strand 3
B
294 296anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il