Analysis of interatomic Contacts of Structural Units in PDB entry:
1FPV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FPV entry

There is 1 chain in PDB entry 1FPV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 37TYR 584
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 1FPV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A0
A
117 121Right-handed alpha
Helix 2
A1
A
122 132Right-handed alpha
Helix 3
B
A
246 249Right-handed alpha
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There are 7 sheets in PDB entry 1FPV. Click on sheet of interest to get list of strands forming it: BDG, CDG, CHF, CYL, LP2, L2, LP4,

There are 5 strands in BDG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 54first strand
Strand 2
A
58 71anti-parallel
Strand 3
A
523 538anti-parallel
Strand 4
A
134 150anti-parallel
Strand 5
A
261 267anti-parallel
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There are 5 strands in CDG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 54first strand
Strand 2
A
58 71anti-parallel
Strand 3
A
523 538anti-parallel
Strand 4
A
134 150anti-parallel
Strand 5
A
273 275anti-parallel
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There are 4 strands in CHF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 112first strand
Strand 2
A
498 501anti-parallel
Strand 3
A
173 177anti-parallel
Strand 4
A
252 255anti-parallel
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There are 2 strands in CYL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 156first strand
Strand 2
A
162 168anti-parallel
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There are 2 strands in LP2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 111first strand
Strand 2
A
206 211anti-parallel
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There are 2 strands in L2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 218first strand
Strand 2
A
230 235anti-parallel
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There are 2 strands in LP4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 417first strand
Strand 2
A
429 430anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il