Analysis of interatomic Contacts of Structural Units in PDB entry:
1FZF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FZF entry

There are 10 chains in PDB entry 1FZF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 126ASP 192
B
 VAL 157PRO 459
C
 THR 102THR 393
D
 LEU 135VAL 188
E
 ASN 164PRO 459
F
 TYR 109THR 393
S
 GLY 1PRO 4
T
 GLY 1PRO 4
M
 GLY 1PRO 4
N
 GLY 1PRO 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 1FZF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
131 161Right-handed alpha
Helix 2
2
A
175 186Right-handed alpha
Helix 3
3
B
163 165Right-handed 310
Helix 4
4
B
169 192Right-handed alpha
Helix 5
5
B
211 216Right-handed alpha
Helix 6
6
B
244 246Right-handed 310
Helix 7
7
B
266 271Right-handed alpha
Helix 8
8
B
296 303Right-handed alpha
Helix 9
9
B
352 355Right-handed alpha
Helix 10
10
B
362 368Right-handed alpha
Helix 11
11
B
394 397Right-handed alpha
Helix 12
12
B
438 441Right-handed alpha
Helix 13
13
C
104 134Right-handed alpha
Helix 14
14
C
153 159Right-handed alpha
Helix 15
15
C
208 213Right-handed alpha
Helix 16
16
C
230 237Right-handed alpha
Helix 17
17
C
270 272Right-handed 310
Helix 18
18
C
289 291Right-handed 310
Helix 19
19
C
303 305Right-handed 310
Helix 20
20
C
326 330Right-handed alpha
Helix 21
21
C
389 391Right-handed 310
Helix 22
22
D
137 161Right-handed alpha
Helix 23
23
D
175 186Right-handed alpha
Helix 24
24
E
167 192Right-handed 310
Helix 25
25
E
211 216Right-handed alpha
Helix 26
26
E
244 246Right-handed 310
Helix 27
27
E
266 271Right-handed alpha
Helix 28
28
E
296 303Right-handed alpha
Helix 29
29
E
334 336Right-handed 310
Helix 30
30
E
352 355Right-handed alpha
Helix 31
31
E
362 368Right-handed alpha
Helix 32
32
E
394 398Right-handed alpha
Helix 33
33
E
438 441Right-handed alpha
Helix 34
34
F
112 134Right-handed alpha
Helix 35
35
F
153 159Right-handed alpha
Helix 36
36
F
208 213Right-handed alpha
Helix 37
37
F
230 237Right-handed alpha
Helix 38
38
F
270 272Right-handed 310
Helix 39
39
F
289 291Right-handed 310
Helix 40
40
F
303 305Right-handed 310
Helix 41
41
F
326 330Right-handed alpha
Helix 42
42
F
389 391Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 1FZF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 227first strand
Strand 2
B
236 240anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 274first strand
Strand 2
B
292 294anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
345 347first strand
Strand 2
B
321 326anti-parallel
Strand 3
B
308 315anti-parallel
Strand 4
B
449 456anti-parallel
Strand 5
B
250 255anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 331first strand
Strand 2
B
340 343anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
165 169first strand
Strand 2
C
178 184anti-parallel
Strand 3
C
190 197anti-parallel
Strand 4
C
381 388anti-parallel
Strand 5
C
244 251anti-parallel
Strand 6
C
257 263anti-parallel
Strand 7
C
280 283anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 216first strand
Strand 2
C
226 228anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
223 227first strand
Strand 2
E
236 240anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
272 274first strand
Strand 2
E
292 294anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
345 347first strand
Strand 2
E
321 326anti-parallel
Strand 3
E
309 315anti-parallel
Strand 4
E
449 455anti-parallel
Strand 5
E
250 255anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
328 331first strand
Strand 2
E
340 343anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
165 169first strand
Strand 2
F
178 184anti-parallel
Strand 3
F
190 197anti-parallel
Strand 4
F
381 388anti-parallel
Strand 5
F
244 251anti-parallel
Strand 6
F
257 263anti-parallel
Strand 7
F
280 283anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
214 216first strand
Strand 2
F
226 228anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il