Analysis of interatomic Contacts of Structural Units in PDB entry:
1G3M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1G3M entry

There are 2 chains in PDB entry 1G3M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3THR 292
B
 SER 3THR 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1G3M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 10Right-handed alpha
Helix 2
2
A
21 26Right-handed alpha
Helix 3
3
A
26 32Right-handed alpha
Helix 4
4
A
49 62Right-handed alpha
Helix 5
5
A
65 70Right-handed alpha
Helix 6
6
A
73 78Right-handed alpha
Helix 7
7
A
91 97Right-handed alpha
Helix 8
8
A
109 113Right-handed 310
Helix 9
9
A
114 120Right-handed alpha
Helix 10
10
A
130 145Right-handed alpha
Helix 11
11
A
153 163Right-handed alpha
Helix 12
12
A
170 182Right-handed alpha
Helix 13
13
A
192 198Right-handed alpha
Helix 14
14
A
198 210Right-handed alpha
Helix 15
15
A
215 226Right-handed alpha
Helix 16
16
A
227 234Right-handed alpha
Helix 17
17
A
261 266Right-handed 310
Helix 18
18
A
268 284Right-handed alpha
Helix 19
19
B
3 10Right-handed alpha
Helix 20
21
B
26 32Right-handed alpha
Helix 21
22
B
49 62Right-handed alpha
Helix 22
24
B
73 78Right-handed alpha
Helix 23
25
B
90 97Right-handed alpha
Helix 24
26
B
109 113Right-handed 310
Helix 25
27
B
114 120Right-handed alpha
Helix 26
28
B
130 145Right-handed alpha
Helix 27
29
B
153 163Right-handed alpha
Helix 28
30
B
170 182Right-handed alpha
Helix 29
31
B
192 198Right-handed alpha
Helix 30
32
B
198 210Right-handed alpha
Helix 31
33
B
215 226Right-handed alpha
Helix 32
34
B
227 234Right-handed alpha
Helix 33
35
B
261 266Right-handed 310
Helix 34
36
B
268 284Right-handed alpha
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There are 4 sheets in PDB entry 1G3M. Click on sheet of interest to get list of strands forming it: A, B, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 14first strand
Strand 2
A
17 20anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
40 44parallel
Strand 3
A
123 128parallel
Strand 4
A
187 191parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 14first strand
Strand 2
B
17 20anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 106first strand
Strand 2
B
40 44parallel
Strand 3
B
123 128parallel
Strand 4
B
187 191parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il