Analysis of interatomic Contacts of Structural Units in PDB entry:
1GGU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GGU entry

There are 2 chains in PDB entry 1GGU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PHE 8ARG 727
B
PHE 8ARG 727
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1GGU. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
59 63Right-handed alpha
Helix 2
2
A
111 113Right-handed 310
Helix 3
3
A
176 178Right-handed 310
Helix 4
4
A
198 204Right-handed alpha
Helix 5
5
A
234 244Right-handed alpha
Helix 6
6
A
249 251Right-handed 310
Helix 7
7
A
255 266Right-handed alpha
Helix 8
8
A
289 291Right-handed 310
Helix 9
9
A
295 305Right-handed alpha
Helix 10
10
A
314 328Right-handed alpha
Helix 11
11
A
414 419Right-handed alpha
Helix 12
12
A
428 436Right-handed alpha
Helix 13
13
A
478 481Right-handed alpha
Helix 14
14
A
488 499Right-handed alpha
Helix 15
15
A
591 593Right-handed 310
Helix 16
16
B
59 63Right-handed alpha
Helix 17
17
B
111 113Right-handed 310
Helix 18
18
B
176 178Right-handed 310
Helix 19
19
B
198 206Right-handed alpha
Helix 20
20
B
234 244Right-handed alpha
Helix 21
21
B
249 251Right-handed 310
Helix 22
22
B
255 266Right-handed alpha
Helix 23
23
B
296 305Right-handed alpha
Helix 24
24
B
314 328Right-handed alpha
Helix 25
25
B
414 418Right-handed alpha
Helix 26
26
B
428 436Right-handed alpha
Helix 27
27
B
478 481Right-handed alpha
Helix 28
28
B
488 499Right-handed alpha
Helix 29
29
B
591 593Right-handed 310
Helix 30
30
B
595 597Right-handed 310
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There are 20 sheets in PDB entry 1GGU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
74 77first strand
Strand 2
A
180 183parallel
Strand 3
A
155 157anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
47 52first strand
Strand 2
A
82 88anti-parallel
Strand 3
A
141 147anti-parallel
Strand 4
A
131 138anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
116 119first strand
Strand 2
A
99 104anti-parallel
Strand 3
A
158 164anti-parallel
Strand 4
A
169 171anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
209 216first strand
Strand 2
A
219 226anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
474 476first strand
Strand 2
A
463 467anti-parallel
Strand 3
A
332 338anti-parallel
Strand 4
A
372 380anti-parallel
Strand 5
A
391 395anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
349 354first strand
Strand 2
A
438 444parallel
Strand 3
A
450 456anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
518 524first strand
Strand 2
A
533 541anti-parallel
Strand 3
A
581 589anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
618 626first strand
Strand 2
A
603 611anti-parallel
Strand 3
A
547 558anti-parallel
Strand 4
A
566 577anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
632 638first strand
Strand 2
A
645 653anti-parallel
Strand 3
A
688 696anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
676 680first strand
Strand 2
A
663 668anti-parallel
Strand 3
A
705 710anti-parallel
Strand 4
A
715 721anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
74 77first strand
Strand 2
B
180 183parallel
Strand 3
B
155 157anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
47 52first strand
Strand 2
B
82 88anti-parallel
Strand 3
B
141 147anti-parallel
Strand 4
B
131 138anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
116 120first strand
Strand 2
B
98 104anti-parallel
Strand 3
B
158 164anti-parallel
Strand 4
B
169 171anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
209 216first strand
Strand 2
B
219 226anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
474 476first strand
Strand 2
B
463 467anti-parallel
Strand 3
B
332 338anti-parallel
Strand 4
B
372 380anti-parallel
Strand 5
B
391 395anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
349 354first strand
Strand 2
B
438 444parallel
Strand 3
B
450 456anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
518 524first strand
Strand 2
B
533 541anti-parallel
Strand 3
B
581 589anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
618 626first strand
Strand 2
B
603 612anti-parallel
Strand 3
B
547 558anti-parallel
Strand 4
B
566 577anti-parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
633 638first strand
Strand 2
B
645 653anti-parallel
Strand 3
B
688 696anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
676 680first strand
Strand 2
B
663 668anti-parallel
Strand 3
B
701 710anti-parallel
Strand 4
B
717 725anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il