Analysis of interatomic Contacts of Structural Units in PDB entry:
1GK8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GK8 entry

There are 28 chains in PDB entry 1GK8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7TYR 103
A
 ILE 105GLY 150
A
 PRO 152THR 200
A
 ASP 202VAL 255
A
 ALA 257TRP 368
A
 SER 370LEU 475
C
 THR 7TYR 103
C
 ILE 105GLY 150
C
 PRO 152THR 200
C
 ASP 202VAL 255
C
 ALA 257TRP 368
C
 SER 370LEU 475
E
 ALA 11TYR 103
E
 ILE 105GLY 150
E
 PRO 152THR 200
E
 ASP 202VAL 255
E
 ALA 257TRP 368
E
 SER 370LEU 475
G
 ALA 9TYR 103
G
 ILE 105GLY 150
G
 PRO 152THR 200
G
 ASP 202VAL 255
G
 ALA 257TRP 368
G
 SER 370LEU 475
I
 MET 2PRO 126
K
 MET 2PRO 126
M
 MET 2PRO 126
O
 MET 2PRO 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are104 helices in PDB entry 1GK8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 25Right-handed alpha
Helix 2
2
A
49 61Right-handed alpha
Helix 3
3
A
69 75Right-handed 310
Helix 4
4
A
76 81Right-handed alpha
Helix 5
5
A
104 108Right-handed 310
Helix 6
6
A
112 122Right-handed alpha
Helix 7
7
A
123 127Right-handed 310
Helix 8
8
A
141 146Right-handed alpha
Helix 9
9
A
154 163Right-handed alpha
Helix 10
10
A
181 195Right-handed alpha
Helix 11
11
A
213 233Right-handed alpha
Helix 12
12
A
246 261Right-handed alpha
Helix 13
13
A
269 288Right-handed alpha
Helix 14
14
A
297 303Right-handed alpha
Helix 15
15
A
310 322Right-handed alpha
Helix 16
16
A
338 351Right-handed alpha
Helix 17
17
A
358 361Right-handed 310
Helix 18
18
A
383 385Right-handed 310
Helix 19
19
A
386 395Right-handed alpha
Helix 20
20
A
403 408Right-handed alpha
Helix 21
21
A
412 433Right-handed alpha
Helix 22
22
A
436 463Right-handed alpha
Helix 23
23
C
20 25Right-handed alpha
Helix 24
24
C
49 61Right-handed alpha
Helix 25
25
C
69 75Right-handed 310
Helix 26
26
C
76 81Right-handed alpha
Helix 27
27
C
104 108Right-handed 310
Helix 28
28
C
112 122Right-handed alpha
Helix 29
29
C
123 127Right-handed 310
Helix 30
30
C
141 146Right-handed alpha
Helix 31
31
C
154 163Right-handed alpha
Helix 32
32
C
181 195Right-handed alpha
Helix 33
33
C
213 233Right-handed alpha
Helix 34
34
C
246 261Right-handed alpha
Helix 35
35
C
269 288Right-handed alpha
Helix 36
36
C
297 303Right-handed alpha
Helix 37
37
C
310 322Right-handed alpha
Helix 38
38
C
338 351Right-handed alpha
Helix 39
39
C
358 361Right-handed 310
Helix 40
40
C
383 385Right-handed 310
Helix 41
41
C
386 395Right-handed alpha
Helix 42
42
C
403 408Right-handed alpha
Helix 43
43
C
412 433Right-handed alpha
Helix 44
44
C
436 463Right-handed alpha
Helix 45
45
E
20 25Right-handed alpha
Helix 46
46
E
49 61Right-handed alpha
Helix 47
47
E
69 75Right-handed 310
Helix 48
48
E
76 81Right-handed alpha
Helix 49
49
E
104 108Right-handed 310
Helix 50
50
E
112 122Right-handed alpha
Helix 51
51
E
123 127Right-handed 310
Helix 52
52
E
141 146Right-handed alpha
Helix 53
53
E
154 163Right-handed alpha
Helix 54
54
E
181 195Right-handed alpha
Helix 55
55
E
213 233Right-handed alpha
Helix 56
56
E
246 261Right-handed alpha
Helix 57
57
E
269 288Right-handed alpha
Helix 58
58
E
297 303Right-handed alpha
Helix 59
59
E
310 322Right-handed alpha
Helix 60
60
E
338 351Right-handed alpha
Helix 61
61
E
358 361Right-handed 310
Helix 62
62
E
383 385Right-handed 310
Helix 63
63
E
386 395Right-handed alpha
Helix 64
64
E
403 408Right-handed alpha
Helix 65
65
E
412 433Right-handed alpha
Helix 66
66
E
436 463Right-handed alpha
Helix 67
67
G
20 25Right-handed alpha
Helix 68
68
G
49 61Right-handed alpha
Helix 69
69
G
69 75Right-handed 310
Helix 70
70
G
76 81Right-handed alpha
Helix 71
71
G
104 108Right-handed 310
Helix 72
72
G
112 122Right-handed alpha
Helix 73
73
G
123 127Right-handed 310
Helix 74
74
G
141 146Right-handed alpha
Helix 75
75
G
154 163Right-handed alpha
Helix 76
76
G
181 195Right-handed alpha
Helix 77
77
G
213 233Right-handed alpha
Helix 78
78
G
246 261Right-handed alpha
Helix 79
79
G
269 288Right-handed alpha
Helix 80
80
G
297 303Right-handed alpha
Helix 81
81
G
310 322Right-handed alpha
Helix 82
82
G
338 351Right-handed alpha
Helix 83
83
G
358 361Right-handed 310
Helix 84
84
G
383 385Right-handed 310
Helix 85
85
G
386 395Right-handed alpha
Helix 86
86
G
403 408Right-handed alpha
Helix 87
87
G
412 433Right-handed alpha
Helix 88
88
G
436 463Right-handed alpha
Helix 89
89
I
22 36Right-handed alpha
Helix 90
90
I
46 50Right-handed 310
Helix 91
91
I
54 60Right-handed 310
Helix 92
92
I
85 100Right-handed alpha
Helix 93
93
K
22 36Right-handed alpha
Helix 94
94
K
46 50Right-handed 310
Helix 95
95
K
54 60Right-handed 310
Helix 96
96
K
85 100Right-handed alpha
Helix 97
97
M
22 36Right-handed alpha
Helix 98
98
M
46 50Right-handed 310
Helix 99
99
M
54 60Right-handed 310
Helix 100
100
M
85 100Right-handed alpha
Helix 101
101
O
22 36Right-handed alpha
Helix 102
102
O
46 50Right-handed 310
Helix 103
103
O
54 60Right-handed 310
Helix 104
104
O
85 100Right-handed alpha
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There are 16 sheets in PDB entry 1GK8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, CA, CB, CC, EA, EB, EC, GA, GB, GC, IA, KA, MA, OA,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 89first strand
Strand 2
A
97 103anti-parallel
Strand 3
A
36 44anti-parallel
Strand 4
A
130 139anti-parallel
Strand 5
A
308 309parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
399 401parallel
Strand 3
A
375 379parallel
Strand 4
A
325 327parallel
Strand 5
A
290 294parallel
Strand 6
A
264 268parallel
Strand 7
A
237 241parallel
Strand 8
A
199 201parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 354first strand
Strand 2
A
366 367anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 89first strand
Strand 2
C
97 103anti-parallel
Strand 3
C
36 44anti-parallel
Strand 4
C
130 139anti-parallel
Strand 5
C
308 309parallel
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There are 8 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 171first strand
Strand 2
C
399 401parallel
Strand 3
C
375 379parallel
Strand 4
C
325 327parallel
Strand 5
C
290 294parallel
Strand 6
C
264 268parallel
Strand 7
C
237 241parallel
Strand 8
C
199 201parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
353 354first strand
Strand 2
C
366 367anti-parallel
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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
83 89first strand
Strand 2
E
97 103anti-parallel
Strand 3
E
36 44anti-parallel
Strand 4
E
130 139anti-parallel
Strand 5
E
308 309parallel
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There are 8 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
169 171first strand
Strand 2
E
399 401parallel
Strand 3
E
375 379parallel
Strand 4
E
325 327parallel
Strand 5
E
290 294parallel
Strand 6
E
264 268parallel
Strand 7
E
237 241parallel
Strand 8
E
199 201parallel
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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
353 354first strand
Strand 2
E
366 367anti-parallel
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There are 5 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
83 89first strand
Strand 2
G
97 103anti-parallel
Strand 3
G
36 44anti-parallel
Strand 4
G
130 139anti-parallel
Strand 5
G
308 309parallel
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There are 8 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
169 171first strand
Strand 2
G
399 401parallel
Strand 3
G
375 379parallel
Strand 4
G
325 327parallel
Strand 5
G
290 294parallel
Strand 6
G
264 268parallel
Strand 7
G
237 241parallel
Strand 8
G
199 201parallel
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There are 2 strands in GC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
353 354first strand
Strand 2
G
366 367anti-parallel
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There are 4 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
74 76first strand
Strand 2
I
39 45anti-parallel
Strand 3
I
104 111anti-parallel
Strand 4
I
116 124anti-parallel
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There are 4 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
74 76first strand
Strand 2
K
39 45anti-parallel
Strand 3
K
104 111anti-parallel
Strand 4
K
116 124anti-parallel
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There are 4 strands in MA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
74 76first strand
Strand 2
M
39 45anti-parallel
Strand 3
M
104 111anti-parallel
Strand 4
M
116 124anti-parallel
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There are 4 strands in OA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
74 76first strand
Strand 2
O
39 45anti-parallel
Strand 3
O
104 111anti-parallel
Strand 4
O
116 124anti-parallel
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