Analysis of interatomic Contacts of Structural Units in PDB entry:
1GM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GM5 entry

There are 4 chains in PDB entry 1GM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 7TRP 755
X
 C 1 T 12
Y
 G 1 G 20
Z
 G 1 C 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 1GM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 10Right-handed 310
Helix 2
2
A
11 16Right-handed alpha
Helix 3
3
A
21 34Right-handed alpha
Helix 4
4
A
41 49Right-handed alpha
Helix 5
5
A
51 55Right-handed 310
Helix 6
6
A
56 71Right-handed alpha
Helix 7
7
A
77 100Right-handed alpha
Helix 8
8
A
124 133Right-handed alpha
Helix 9
9
A
139 143Right-handed 310
Helix 10
10
A
209 215Right-handed alpha
Helix 11
11
A
265 283Right-handed alpha
Helix 12
12
A
289 297Right-handed alpha
Helix 13
13
A
301 310Right-handed alpha
Helix 14
14
A
313 347Right-handed alpha
Helix 15
15
A
355 365Right-handed alpha
Helix 16
16
A
370 386Right-handed alpha
Helix 17
17
A
401 417Right-handed alpha
Helix 18
18
A
426 442Right-handed alpha
Helix 19
19
A
456 469Right-handed alpha
Helix 20
20
A
480 485Right-handed alpha
Helix 21
21
A
528 536Right-handed alpha
Helix 22
22
A
563 575Right-handed alpha
Helix 23
23
A
597 605Right-handed alpha
Helix 24
24
A
606 609Right-handed 310
Helix 25
25
A
628 636Right-handed alpha
Helix 26
26
A
672 680Right-handed alpha
Helix 27
27
A
698 710Right-handed alpha
Helix 28
28
A
714 724Right-handed alpha
Helix 29
29
A
743 753Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 1GM5. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
255 257anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 172first strand
Strand 2
A
221 224anti-parallel
Strand 3
A
242 244anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 181first strand
Strand 2
A
186 192anti-parallel
Strand 3
A
199 203anti-parallel
Strand 4
A
238 239parallel
Back to list of sheets
Back to top of page

There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 450first strand
Strand 2
A
474 477parallel
Strand 3
A
420 423parallel
Strand 4
A
493 497parallel
Strand 5
A
519 523parallel
Strand 6
A
393 395parallel
Strand 7
A
542 544parallel
Back to list of sheets
Back to top of page

There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
555 556first strand
Strand 2
A
689 691parallel
Strand 3
A
660 662parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il