Analysis of interatomic Contacts of Structural Units in PDB entry:
1GND


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GND entry

There is 1 chain in PDB entry 1GND (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1GND. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 25Right-handed alpha
Helix 2
2
A
49 55Right-handed alpha
Helix 3
3
A
64 66Right-handed 310
Helix 4
4
A
69 71Right-handed 310
Helix 5
5
A
86 94Right-handed alpha
Helix 6
6
A
96 98Right-handed 310
Helix 7
7
A
123 126Right-handed alpha
Helix 8
8
A
134 149Right-handed alpha
Helix 9
9
A
168 174Right-handed alpha
Helix 10
10
A
179 188Right-handed alpha
Helix 11
11
A
196 199Right-handed 310
Helix 12
12
A
202 214Right-handed alpha
Helix 13
13
A
218 220Right-handed 310
Helix 14
14
A
231 245Right-handed 310
Helix 15
15
A
284 286Right-handed 310
Helix 16
16
A
288 290Right-handed 310
Helix 17
17
A
323 326Right-handed 310
Helix 18
18
A
339 341Right-handed 310
Helix 19
19
A
362 365Right-handed alpha
Helix 20
20
A
367 372Right-handed alpha
Helix 21
21
A
411 425Right-handed alpha
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There are 4 sheets in PDB entry 1GND. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 400first strand
Strand 2
A
279 282parallel
Strand 3
A
7 10parallel
Strand 4
A
30 33parallel
Strand 5
A
248 250parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 104first strand
Strand 2
A
225 227anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
107 112anti-parallel
Strand 3
A
317 321parallel
Strand 4
A
332 338anti-parallel
Strand 5
A
349 356anti-parallel
Strand 6
A
291 304anti-parallel
Strand 7
A
378 389anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 270first strand
Strand 2
A
273 275anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il