Analysis of interatomic Contacts of Structural Units in PDB entry:
1GNZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GNZ entry

There is 1 chain in PDB entry 1GNZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 4LEU 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 1GNZ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
104 108Right-handed 310
Helix 2
AA2
A
118 122Right-handed 310
Helix 3
AA3
A
161 166Right-handed alpha
Helix 4
AA4
A
203 208Right-handed alpha
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There are 4 sheets in PDB entry 1GNZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
6 9first strand
Strand 2
A
226 238anti-parallel
Strand 3
A
32 34anti-parallel
Strand 4
A
27 29anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
6 9first strand
Strand 2
A
226 238anti-parallel
Strand 3
A
70 81anti-parallel
Strand 4
A
171 178anti-parallel
Strand 5
A
183 189anti-parallel
Strand 6
A
195 201anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
20 24first strand
Strand 2
A
49 54anti-parallel
Strand 3
A
211 219anti-parallel
Strand 4
A
58 59anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
20 24first strand
Strand 2
A
49 54anti-parallel
Strand 3
A
211 219anti-parallel
Strand 4
A
89 95anti-parallel
Strand 5
A
125 130anti-parallel
Strand 6
A
144 149anti-parallel
Strand 7
A
156 159anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il