Analysis of interatomic Contacts of Structural Units in PDB entry:
1GOF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GOF entry

There is 1 chain in PDB entry 1GOF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 1GLN 639
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 1GOF. Click on helix number for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
H1
A
328 331Right-handed alpha
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There are 9 sheets in PDB entry 1GOF. Click on sheet of interest to get list of strands forming it: S1, S2, S3, S4, S5, S6, S7, S8, S9,

There are 9 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
15 18first strand
Strand 2
A
53 58anti-parallel
Strand 3
A
123 128anti-parallel
Strand 4
A
84 90anti-parallel
Strand 5
A
101 104anti-parallel
Strand 6
A
160 166parallel
Strand 7
A
524 529anti-parallel
Strand 8
A
507 511anti-parallel
Strand 9
A
497 501anti-parallel
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There are 3 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
112 121first strand
Strand 2
A
63 71anti-parallel
Strand 3
A
142 147anti-parallel
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There are 5 strands in S3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
214 219first strand
Strand 2
A
202 207anti-parallel
Strand 3
A
183 186anti-parallel
Strand 4
A
173 176anti-parallel
Strand 5
A
578 580anti-parallel
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There are 4 strands in S4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
230 233first strand
Strand 2
A
238 242anti-parallel
Strand 3
A
250 254anti-parallel
Strand 4
A
259 262anti-parallel
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There are 4 strands in S5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
274 277first strand
Strand 2
A
283 286anti-parallel
Strand 3
A
299 303anti-parallel
Strand 4
A
308 312anti-parallel
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There are 4 strands in S6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
337 339first strand
Strand 2
A
345 347anti-parallel
Strand 3
A
353 358anti-parallel
Strand 4
A
364 370anti-parallel
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There are 4 strands in S7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
385 390first strand
Strand 2
A
395 399anti-parallel
Strand 3
A
414 418anti-parallel
Strand 4
A
427 430anti-parallel
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There are 4 strands in S8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
443 446first strand
Strand 2
A
451 455anti-parallel
Strand 3
A
474 477anti-parallel
Strand 4
A
482 485anti-parallel
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There are 8 strands in S9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
546 555first strand
Strand 2
A
559 564anti-parallel
Strand 3
A
601 605anti-parallel
Strand 4
A
589 596anti-parallel
Strand 5
A
570 575anti-parallel
Strand 6
A
616 623anti-parallel
Strand 7
A
633 638anti-parallel
Strand 8
A
546 555parallel
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