Analysis of interatomic Contacts of Structural Units in PDB entry:
1GVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GVJ entry

There are 2 chains in PDB entry 1GVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 296PRO 437
B
 MET 296GLU 441
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 1GVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
303 314Right-handed alpha
Helix 2
2
A
322 331Right-handed alpha
Helix 3
3
A
336 346Right-handed alpha
Helix 4
4
A
347 351Right-handed 310
Helix 5
5
A
367 380Right-handed alpha
Helix 6
6
A
385 396Right-handed alpha
Helix 7
7
A
417 423Right-handed alpha
Helix 8
8
A
425 433Right-handed alpha
Helix 9
9
B
303 313Right-handed alpha
Helix 10
10
B
322 331Right-handed alpha
Helix 11
11
B
336 346Right-handed alpha
Helix 12
12
B
347 351Right-handed 310
Helix 13
13
B
367 380Right-handed alpha
Helix 14
14
B
385 399Right-handed alpha
Helix 15
15
B
417 423Right-handed alpha
Helix 16
16
B
425 433Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1GVJ. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 356first strand
Strand 2
A
362 364anti-parallel
Strand 3
A
411 414anti-parallel
Strand 4
A
402 404anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 356first strand
Strand 2
B
362 365anti-parallel
Strand 3
B
411 414anti-parallel
Strand 4
B
402 404anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il