Analysis of interatomic Contacts of Structural Units in PDB entry:
1H41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1H41 entry

There are 2 chains in PDB entry 1H41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5LYS 712
B
 GLU 5LYS 712
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 1H41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 30Right-handed alpha
Helix 2
2
A
39 58Right-handed alpha
Helix 3
3
A
81 87Right-handed alpha
Helix 4
4
A
90 95Right-handed alpha
Helix 5
5
A
120 137Right-handed alpha
Helix 6
6
A
187 199Right-handed alpha
Helix 7
7
A
213 217Right-handed 310
Helix 8
8
A
218 233Right-handed alpha
Helix 9
9
A
234 236Right-handed 310
Helix 10
10
A
246 251Right-handed alpha
Helix 11
11
A
261 279Right-handed alpha
Helix 12
12
A
296 301Right-handed 310
Helix 13
13
A
303 316Right-handed alpha
Helix 14
14
A
317 319Right-handed 310
Helix 15
15
A
335 337Right-handed 310
Helix 16
16
A
338 345Right-handed alpha
Helix 17
17
A
346 348Right-handed 310
Helix 18
18
A
374 379Right-handed alpha
Helix 19
19
A
404 413Right-handed alpha
Helix 20
20
A
424 431Right-handed alpha
Helix 21
21
A
458 472Right-handed alpha
Helix 22
22
A
476 489Right-handed alpha
Helix 23
23
A
492 513Right-handed alpha
Helix 24
24
A
540 544Right-handed 310
Helix 25
25
A
545 550Right-handed alpha
Helix 26
26
A
566 571Right-handed 310
Helix 27
27
A
572 581Right-handed alpha
Helix 28
28
A
586 593Right-handed 310
Helix 29
29
A
607 632Right-handed alpha
Helix 30
30
A
638 672Right-handed alpha
Helix 31
31
A
685 696Right-handed alpha
Helix 32
32
A
703 708Right-handed 310
Helix 33
33
B
19 30Right-handed alpha
Helix 34
34
B
39 58Right-handed alpha
Helix 35
35
B
81 87Right-handed alpha
Helix 36
36
B
90 95Right-handed alpha
Helix 37
37
B
120 137Right-handed alpha
Helix 38
38
B
187 199Right-handed alpha
Helix 39
39
B
213 217Right-handed 310
Helix 40
40
B
218 233Right-handed alpha
Helix 41
41
B
234 236Right-handed 310
Helix 42
42
B
246 251Right-handed alpha
Helix 43
43
B
261 279Right-handed alpha
Helix 44
44
B
296 301Right-handed 310
Helix 45
45
B
303 316Right-handed alpha
Helix 46
46
B
317 319Right-handed 310
Helix 47
47
B
335 337Right-handed 310
Helix 48
48
B
338 345Right-handed alpha
Helix 49
49
B
346 348Right-handed 310
Helix 50
50
B
374 379Right-handed alpha
Helix 51
51
B
404 413Right-handed alpha
Helix 52
52
B
424 430Right-handed alpha
Helix 53
53
B
458 472Right-handed alpha
Helix 54
54
B
476 489Right-handed alpha
Helix 55
55
B
492 513Right-handed alpha
Helix 56
56
B
540 544Right-handed 310
Helix 57
57
B
545 550Right-handed alpha
Helix 58
58
B
566 571Right-handed 310
Helix 59
59
B
572 581Right-handed alpha
Helix 60
60
B
586 588Right-handed 310
Helix 61
61
B
589 594Right-handed alpha
Helix 62
62
B
607 632Right-handed alpha
Helix 63
63
B
633 637Right-handed 310
Helix 64
64
B
638 672Right-handed alpha
Helix 65
65
B
685 696Right-handed alpha
Helix 66
66
B
703 708Right-handed 310
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There are 6 sheets in PDB entry 1H41. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
32 35parallel
Strand 3
A
72 76parallel
Strand 4
A
111 118parallel
Strand 5
A
101 108anti-parallel
Strand 6
A
145 148anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 158first strand
Strand 2
A
440 444parallel
Strand 3
A
383 389parallel
Strand 4
A
355 360parallel
Strand 5
A
321 325parallel
Strand 6
A
284 287parallel
Strand 7
A
238 243parallel
Strand 8
A
204 206parallel
Strand 9
A
154 158parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
555 556first strand
Strand 2
A
596 597anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 64first strand
Strand 2
B
32 35parallel
Strand 3
B
72 76parallel
Strand 4
B
111 117parallel
Strand 5
B
101 108anti-parallel
Strand 6
B
145 148anti-parallel
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There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 158first strand
Strand 2
B
440 444parallel
Strand 3
B
384 389parallel
Strand 4
B
355 360parallel
Strand 5
B
321 325parallel
Strand 6
B
284 287parallel
Strand 7
B
238 243parallel
Strand 8
B
204 206parallel
Strand 9
B
154 158parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
555 557first strand
Strand 2
B
595 597anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il