Analysis of interatomic Contacts of Structural Units in PDB entry:
1HC9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1HC9 entry

There are 4 chains in PDB entry 1HC9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ILE 1GLY 74
B
ILE 1GLY 74
C
TRP 1ASP 13
D
TRP 1PRO 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 2 helices in PDB entry 1HC9. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
32 37Right-handed alpha
Helix 2
2
B
32 37Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 1HC9. Click on sheet of interest to get list of strands forming it: AA, AB, CB, BA, BB, DB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2 5first strand
Strand 2
A
12 15anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
56 60first strand
Strand 2
A
22 28anti-parallel
Strand 3
A
39 45anti-parallel
Strand 4
C
2 4first strand
Strand 5
C
7 11anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2 5first strand
Strand 2
B
12 15anti-parallel
Strand 3
B
56 60first strand
Strand 4
B
22 28anti-parallel
Strand 5
B
39 45anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
3 4first strand
Strand 2

0 0first strand
Back to list of sheets
Back to top of page

There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1

0 0first strand
Strand 2

0 0first strand
Strand 3

0 0first strand
Strand 4

0 0first strand
Back to list of sheets
Back to top of page

There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1

0 0first strand
Strand 2

0 0first strand
Strand 3

0 0first strand
Strand 4

0 0first strand
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il