Analysis of interatomic Contacts of Structural Units in PDB entry:
1HJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1HJV entry

There are 4 chains in PDB entry 1HJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 22THR 383
B
 TYR 22THR 383
C
 TYR 22THR 383
D
 TYR 22THR 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 1HJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 40Right-handed 310
Helix 2
2
A
42 46Right-handed 310
Helix 3
3
A
72 83Right-handed alpha
Helix 4
4
A
99 101Right-handed 310
Helix 5
5
A
102 112Right-handed alpha
Helix 6
6
A
112 131Right-handed alpha
Helix 7
7
A
143 147Right-handed 310
Helix 8
8
A
148 166Right-handed alpha
Helix 9
9
A
181 189Right-handed alpha
Helix 10
10
A
190 198Right-handed alpha
Helix 11
11
A
210 214Right-handed 310
Helix 12
12
A
236 248Right-handed alpha
Helix 13
13
A
250 252Right-handed 310
Helix 14
14
A
296 303Right-handed alpha
Helix 15
15
A
330 344Right-handed alpha
Helix 16
16
A
353 357Right-handed 310
Helix 17
17
A
361 365Right-handed 310
Helix 18
18
A
370 381Right-handed alpha
Helix 19
19
B
31 35Right-handed 310
Helix 20
20
B
36 40Right-handed 310
Helix 21
21
B
42 46Right-handed 310
Helix 22
22
B
72 83Right-handed alpha
Helix 23
23
B
102 112Right-handed alpha
Helix 24
24
B
112 131Right-handed alpha
Helix 25
25
B
146 166Right-handed alpha
Helix 26
26
B
181 189Right-handed alpha
Helix 27
27
B
190 198Right-handed alpha
Helix 28
28
B
210 214Right-handed 310
Helix 29
29
B
226 230Right-handed 310
Helix 30
30
B
236 247Right-handed alpha
Helix 31
31
B
250 252Right-handed 310
Helix 32
32
B
296 303Right-handed alpha
Helix 33
33
B
330 344Right-handed alpha
Helix 34
34
B
353 357Right-handed 310
Helix 35
35
B
370 382Right-handed alpha
Helix 36
36
C
36 40Right-handed 310
Helix 37
37
C
42 46Right-handed 310
Helix 38
38
C
72 83Right-handed alpha
Helix 39
39
C
102 112Right-handed alpha
Helix 40
40
C
112 130Right-handed alpha
Helix 41
41
C
143 145Right-handed 310
Helix 42
42
C
146 166Right-handed alpha
Helix 43
43
C
181 187Right-handed alpha
Helix 44
44
C
190 198Right-handed alpha
Helix 45
45
C
210 214Right-handed 310
Helix 46
46
C
236 247Right-handed alpha
Helix 47
47
C
250 252Right-handed 310
Helix 48
48
C
296 303Right-handed alpha
Helix 49
49
C
330 344Right-handed alpha
Helix 50
50
C
370 381Right-handed alpha
Helix 51
51
D
36 40Right-handed 310
Helix 52
52
D
42 46Right-handed 310
Helix 53
53
D
72 82Right-handed alpha
Helix 54
54
D
98 129Right-handed alpha
Helix 55
55
D
143 145Right-handed 310
Helix 56
56
D
146 166Right-handed alpha
Helix 57
57
D
181 189Right-handed alpha
Helix 58
58
D
190 198Right-handed alpha
Helix 59
59
D
210 214Right-handed 310
Helix 60
60
D
236 247Right-handed alpha
Helix 61
61
D
296 304Right-handed alpha
Helix 62
62
D
330 344Right-handed alpha
Helix 63
63
D
353 357Right-handed 310
Helix 64
64
D
370 381Right-handed alpha
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There are 8 sheets in PDB entry 1HJV. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, DA, DB,

There are 11 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 29first strand
Strand 2
A
348 352parallel
Strand 3
A
254 259parallel
Strand 4
A
200 204parallel
Strand 5
A
173 179parallel
Strand 6
A
134 138parallel
Strand 7
A
91 97parallel
Strand 8
A
53 61parallel
Strand 9
A
23 29parallel
Strand 10
A
348 352parallel
Strand 11
A
23 29parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 281first strand
Strand 2
A
261 267anti-parallel
Strand 3
A
293 295anti-parallel
Strand 4
A
261 267anti-parallel
Strand 5
A
307 311first strand
Strand 6
A
316 321anti-parallel
Strand 7
A
324 327anti-parallel
Strand 8
A
261 267anti-parallel
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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 29first strand
Strand 2
B
348 352parallel
Strand 3
B
254 259parallel
Strand 4
B
200 204parallel
Strand 5
B
173 179parallel
Strand 6
B
134 138parallel
Strand 7
B
91 97parallel
Strand 8
B
53 62parallel
Strand 9
B
23 29parallel
Strand 10
B
23 29first strand
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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 281first strand
Strand 2
B
261 267anti-parallel
Strand 3
B
293 295anti-parallel
Strand 4
B
261 267anti-parallel
Strand 5
B
307 311first strand
Strand 6
B
316 321anti-parallel
Strand 7
B
324 327anti-parallel
Strand 8
B
261 267anti-parallel
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There are 16 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 29first strand
Strand 2
C
348 352parallel
Strand 3
C
53 57first strand
Strand 4
C
23 29parallel
Strand 5
C
91 98first strand
Strand 6
C
53 57parallel
Strand 7
C
134 139first strand
Strand 8
C
91 98parallel
Strand 9
C
173 179first strand
Strand 10
C
134 139parallel
Strand 11
C
200 204first strand
Strand 12
C
173 179parallel
Strand 13
C
254 259first strand
Strand 14
C
200 204parallel
Strand 15
C
348 352first strand
Strand 16
C
23 29parallel
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There are 8 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
278 281first strand
Strand 2
C
261 267anti-parallel
Strand 3
C
293 295anti-parallel
Strand 4
C
261 267anti-parallel
Strand 5
C
307 311first strand
Strand 6
C
316 321anti-parallel
Strand 7
C
324 327anti-parallel
Strand 8
C
261 267anti-parallel
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There are 18 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
23 29first strand
Strand 2
D
348 352parallel
Strand 3
D
53 61first strand
Strand 4
D
23 29parallel
Strand 5
D
66 67first strand
Strand 6
D
53 61anti-parallel
Strand 7
D
91 97parallel
Strand 8
D
53 61parallel
Strand 9
D
134 138first strand
Strand 10
D
91 97parallel
Strand 11
D
173 179first strand
Strand 12
D
134 138parallel
Strand 13
D
200 204first strand
Strand 14
D
173 179parallel
Strand 15
D
254 259first strand
Strand 16
D
200 204parallel
Strand 17
D
348 352first strand
Strand 18
D
23 29parallel
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There are 8 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
278 281first strand
Strand 2
D
261 267anti-parallel
Strand 3
D
293 295anti-parallel
Strand 4
D
261 267anti-parallel
Strand 5
D
307 311first strand
Strand 6
D
316 321anti-parallel
Strand 7
D
324 327anti-parallel
Strand 8
D
261 267anti-parallel
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