Analysis of interatomic Contacts of Structural Units in PDB entry:
1HKB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1HKB entry

There are 2 chains in PDB entry 1HKB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 16GLU 914
B
 ASP 16GLU 914
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 73 helices in PDB entry 1HKB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 27Right-handed alpha
Helix 2
2
A
33 51Right-handed alpha
Helix 3
3
A
56 58Right-handed 310
Helix 4
4
A
123 140Right-handed alpha
Helix 5
5
A
185 194Right-handed alpha
Helix 6
6
A
209 220Right-handed alpha
Helix 7
7
A
261 263Right-handed 310
Helix 8
8
A
276 283Right-handed alpha
Helix 9
9
A
292 296Right-handed alpha
Helix 10
10
A
299 316Right-handed alpha
Helix 11
11
A
320 322Right-handed 310
Helix 12
12
A
326 329Right-handed alpha
Helix 13
13
A
336 343Right-handed alpha
Helix 14
14
A
348 358Right-handed alpha
Helix 15
15
A
367 401Right-handed alpha
Helix 16
16
A
415 418Right-handed alpha
Helix 17
17
A
423 434Right-handed alpha
Helix 18
18
A
450 477Right-handed alpha
Helix 19
19
A
481 499Right-handed alpha
Helix 20
20
A
504 506Right-handed 310
Helix 21
21
A
548 550Right-handed 310
Helix 22
22
A
564 567Right-handed alpha
Helix 23
23
A
571 589Right-handed alpha
Helix 24
24
A
633 644Right-handed alpha
Helix 25
25
A
657 666Right-handed alpha
Helix 26
26
A
709 711Right-handed 310
Helix 27
27
A
724 731Right-handed alpha
Helix 28
28
A
742 744Right-handed 310
Helix 29
29
A
750 763Right-handed alpha
Helix 30
30
A
768 770Right-handed 310
Helix 31
31
A
774 777Right-handed alpha
Helix 32
32
A
784 790Right-handed alpha
Helix 33
33
A
797 807Right-handed alpha
Helix 34
34
A
813 848Right-handed alpha
Helix 35
35
A
863 867Right-handed alpha
Helix 36
36
A
871 882Right-handed alpha
Helix 37
37
A
898 912Right-handed alpha
Helix 38
38
B
17 25Right-handed alpha
Helix 39
39
B
27 29Right-handed 310
Helix 40
40
B
33 51Right-handed alpha
Helix 41
41
B
56 58Right-handed 310
Helix 42
42
B
123 140Right-handed alpha
Helix 43
43
B
185 194Right-handed alpha
Helix 44
44
B
209 220Right-handed alpha
Helix 45
45
B
261 263Right-handed 310
Helix 46
46
B
276 282Right-handed alpha
Helix 47
47
B
292 296Right-handed alpha
Helix 48
48
B
299 316Right-handed alpha
Helix 49
49
B
320 322Right-handed 310
Helix 50
50
B
326 329Right-handed alpha
Helix 51
51
B
336 343Right-handed alpha
Helix 52
52
B
348 358Right-handed alpha
Helix 53
53
B
367 401Right-handed alpha
Helix 54
54
B
415 418Right-handed alpha
Helix 55
55
B
423 434Right-handed alpha
Helix 56
56
B
450 477Right-handed alpha
Helix 57
57
B
481 499Right-handed alpha
Helix 58
58
B
504 506Right-handed 310
Helix 59
59
B
564 567Right-handed alpha
Helix 60
60
B
571 589Right-handed alpha
Helix 61
61
B
633 644Right-handed alpha
Helix 62
62
B
657 666Right-handed alpha
Helix 63
63
B
709 711Right-handed 310
Helix 64
64
B
724 731Right-handed alpha
Helix 65
65
B
742 744Right-handed 310
Helix 66
66
B
747 763Right-handed alpha
Helix 67
67
B
768 770Right-handed 310
Helix 68
68
B
784 790Right-handed alpha
Helix 69
69
B
797 807Right-handed alpha
Helix 70
70
B
813 848Right-handed alpha
Helix 71
71
B
863 867Right-handed alpha
Helix 72
72
B
871 882Right-handed alpha
Helix 73
73
B
898 912Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 1HKB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 207first strand
Strand 2
A
149 154parallel
Strand 3
A
78 85parallel
Strand 4
A
90 97anti-parallel
Strand 5
A
106 112anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 258first strand
Strand 2
A
234 241anti-parallel
Strand 3
A
224 230anti-parallel
Strand 4
A
406 413parallel
Strand 5
A
438 444parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
649 655first strand
Strand 2
A
596 602parallel
Strand 3
A
526 533parallel
Strand 4
A
539 546anti-parallel
Strand 5
A
552 559anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
702 706first strand
Strand 2
A
682 689anti-parallel
Strand 3
A
672 678anti-parallel
Strand 4
A
854 861parallel
Strand 5
A
886 892parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
167 170anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 610first strand
Strand 2
A
613 616anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 207first strand
Strand 2
B
149 154parallel
Strand 3
B
78 85parallel
Strand 4
B
90 97anti-parallel
Strand 5
B
105 112anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 258first strand
Strand 2
B
234 241anti-parallel
Strand 3
B
224 230anti-parallel
Strand 4
B
406 413parallel
Strand 5
B
438 444parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
649 655first strand
Strand 2
B
596 602parallel
Strand 3
B
526 533parallel
Strand 4
B
538 546anti-parallel
Strand 5
B
552 560anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
702 706first strand
Strand 2
B
682 689anti-parallel
Strand 3
B
672 678anti-parallel
Strand 4
B
854 861parallel
Strand 5
B
886 892parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 159first strand
Strand 2
B
167 170anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
606 610first strand
Strand 2
B
613 616anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il