Analysis of interatomic Contacts of Structural Units in PDB entry:
1HM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1HM5 entry

There are 2 chains in PDB entry 1HM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ILE 556
B
 ALA 1ILE 556
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 1HM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 6Right-handed alpha
Helix 2
2
A
6 20Right-handed alpha
Helix 3
3
A
21 23Right-handed 310
Helix 4
4
A
24 31Right-handed alpha
Helix 5
5
A
34 39Right-handed alpha
Helix 6
6
A
60 74Right-handed alpha
Helix 7
7
A
75 85Right-handed alpha
Helix 8
8
A
98 103Right-handed alpha
Helix 9
9
A
117 138Right-handed alpha
Helix 10
10
A
156 159Right-handed 310
Helix 11
11
A
160 170Right-handed alpha
Helix 12
12
A
171 174Right-handed 310
Helix 13
13
A
187 196Right-handed alpha
Helix 14
14
A
197 198Right-handed 310
Helix 15
15
A
199 201Right-handed 310
Helix 16
16
A
214 233Right-handed alpha
Helix 17
17
A
234 236Right-handed 310
Helix 18
18
A
237 241Right-handed alpha
Helix 19
19
A
248 256Right-handed alpha
Helix 20
20
A
258 260Right-handed 310
Helix 21
21
A
270 274Right-handed 310
Helix 22
22
A
277 279Right-handed 310
Helix 23
23
A
280 288Right-handed alpha
Helix 24
24
A
288 309Right-handed alpha
Helix 25
25
A
310 313Right-handed 310
Helix 26
26
A
314 329Right-handed alpha
Helix 27
27
A
341 345Right-handed 310
Helix 28
28
A
346 360Right-handed alpha
Helix 29
29
A
385 389Right-handed 310
Helix 30
30
A
390 397Right-handed alpha
Helix 31
31
A
415 417Right-handed 310
Helix 32
32
A
418 438Right-handed alpha
Helix 33
33
A
440 451Right-handed alpha
Helix 34
34
A
454 462Right-handed alpha
Helix 35
35
A
463 466Right-handed 310
Helix 36
36
A
482 504Right-handed alpha
Helix 37
37
A
511 513Right-handed 310
Helix 38
38
A
514 529Right-handed alpha
Helix 39
39
A
538 552Right-handed alpha
Helix 40
40
B
1 6Right-handed alpha
Helix 41
41
B
6 20Right-handed alpha
Helix 42
42
B
21 23Right-handed 310
Helix 43
43
B
24 31Right-handed alpha
Helix 44
44
B
34 39Right-handed alpha
Helix 45
45
B
60 74Right-handed alpha
Helix 46
46
B
75 85Right-handed alpha
Helix 47
47
B
98 103Right-handed alpha
Helix 48
48
B
117 137Right-handed alpha
Helix 49
49
B
156 159Right-handed 310
Helix 50
50
B
160 170Right-handed alpha
Helix 51
51
B
171 174Right-handed 310
Helix 52
52
B
187 196Right-handed alpha
Helix 53
53
B
197 198Right-handed 310
Helix 54
54
B
199 201Right-handed 310
Helix 55
55
B
214 233Right-handed alpha
Helix 56
56
B
234 240Right-handed 310
Helix 57
57
B
248 256Right-handed alpha
Helix 58
58
B
258 260Right-handed 310
Helix 59
59
B
270 274Right-handed 310
Helix 60
60
B
277 279Right-handed 310
Helix 61
61
B
280 288Right-handed alpha
Helix 62
62
B
288 309Right-handed alpha
Helix 63
63
B
310 313Right-handed 310
Helix 64
64
B
314 329Right-handed alpha
Helix 65
65
B
341 345Right-handed 310
Helix 66
66
B
346 360Right-handed alpha
Helix 67
67
B
385 389Right-handed 310
Helix 68
68
B
390 397Right-handed alpha
Helix 69
69
B
415 417Right-handed 310
Helix 70
70
B
418 438Right-handed alpha
Helix 71
71
B
440 451Right-handed alpha
Helix 72
72
B
454 462Right-handed alpha
Helix 73
73
B
463 466Right-handed 310
Helix 74
74
B
482 505Right-handed alpha
Helix 75
75
B
511 513Right-handed 310
Helix 76
76
B
514 525Right-handed alpha
Helix 77
77
B
526 529Right-handed 310
Helix 78
78
B
538 552Right-handed alpha
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There are 5 sheets in PDB entry 1HM5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
49 53anti-parallel
Strand 3
A
473 480anti-parallel
Strand 4
A
403 410parallel
Strand 5
A
334 339parallel
Strand 6
A
377 379parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 183first strand
Strand 2
A
150 154parallel
Strand 3
A
203 208parallel
Strand 4
A
242 245parallel
Strand 5
A
262 263parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 44first strand
Strand 2
B
49 53anti-parallel
Strand 3
B
473 480anti-parallel
Strand 4
B
403 410parallel
Strand 5
B
334 339parallel
Strand 6
B
377 379parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 112first strand
Strand 2
B
115 116anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 183first strand
Strand 2
B
150 154parallel
Strand 3
B
203 208parallel
Strand 4
B
242 245parallel
Strand 5
B
262 263parallel
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