Analysis of interatomic Contacts of Structural Units in PDB entry:
1HPZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1HPZ entry

There are 2 chains in PDB entry 1HPZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 1ILE 556
B
PRO 1GLU 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 1HPZ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
29 42Right-handed alpha
Helix 2
2
A
79 84Right-handed alpha
Helix 3
3
A
96 100Right-handed 310
Helix 4
4
A
112 115Right-handed 310
Helix 5
5
A
124 129Right-handed 310
Helix 6
6
A
155 169Right-handed alpha
Helix 7
7
A
170 175Right-handed alpha
Helix 8
8
A
194 211Right-handed alpha
Helix 9
9
A
253 268Right-handed alpha
Helix 10
10
A
276 282Right-handed alpha
Helix 11
11
A
283 285Right-handed 310
Helix 12
12
A
296 311Right-handed alpha
Helix 13
13
A
363 384Right-handed alpha
Helix 14
14
A
394 405Right-handed alpha
Helix 15
15
A
473 488Right-handed alpha
Helix 16
16
A
499 508Right-handed alpha
Helix 17
17
A
515 528Right-handed alpha
Helix 18
18
A
544 549Right-handed alpha
Helix 19
19
B
27 44Right-handed alpha
Helix 20
20
B
77 84Right-handed alpha
Helix 21
21
B
85 88Right-handed 310
Helix 22
22
B
121 129Right-handed 310
Helix 23
23
B
134 138Right-handed 310
Helix 24
24
B
154 175Right-handed alpha
Helix 25
25
B
194 212Right-handed alpha
Helix 26
26
B
253 268Right-handed alpha
Helix 27
27
B
276 281Right-handed alpha
Helix 28
28
B
299 303Right-handed 310
Helix 29
29
B
304 308Right-handed 310
Helix 30
30
B
363 384Right-handed alpha
Helix 31
31
B
394 402Right-handed alpha
Helix 32
32
B
403 405Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 1HPZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
105 110first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
179 183anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
227 229first strand
Strand 2
A
232 234anti-parallel
Strand 3
A
239 240anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
348 355first strand
Strand 2
A
336 342anti-parallel
Strand 3
A
326 333anti-parallel
Strand 4
A
388 390parallel
Strand 5
A
414 415parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
465 470first strand
Strand 2
A
452 459anti-parallel
Strand 3
A
438 446anti-parallel
Strand 4
A
493 497parallel
Strand 5
A
531 535parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
60 63first strand
Strand 2
B
72 75anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
179 183first strand
Strand 2
B
186 191anti-parallel
Strand 3
B
105 110anti-parallel
Strand 4
B
232 234anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
130 132first strand
Strand 2
B
142 144anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
348 355first strand
Strand 2
B
336 342anti-parallel
Strand 3
B
326 331anti-parallel
Strand 4
B
388 391parallel
Strand 5
B
414 416parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il