Analysis of interatomic Contacts of Structural Units in PDB entry:
1IMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1IMV entry

There is 1 chain in PDB entry 1IMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 16PRO 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1IMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 29Right-handed alpha
Helix 2
2
A
29 53Right-handed alpha
Helix 3
3
A
61 73Right-handed alpha
Helix 4
4
A
74 76Right-handed 310
Helix 5
5
A
77 88Right-handed alpha
Helix 6
6
A
89 93Right-handed 310
Helix 7
7
A
97 110Right-handed alpha
Helix 8
8
A
131 143Right-handed alpha
Helix 9
9
A
152 168Right-handed alpha
Helix 10
10
A
202 206Right-handed 310
Helix 11
11
A
266 271Right-handed alpha
Helix 12
12
A
274 285Right-handed alpha
Helix 13
13
A
305 311Right-handed alpha
Helix 14
14
A
315 320Right-handed alpha
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There are 4 sheets in PDB entry 1IMV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 369first strand
Strand 2
A
286 295parallel
Strand 3
A
218 236anti-parallel
Strand 4
A
207 212anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 369first strand
Strand 2
A
286 295parallel
Strand 3
A
218 236anti-parallel
Strand 4
A
241 248anti-parallel
Strand 5
A
252 259anti-parallel
Strand 6
A
374 380anti-parallel
Strand 7
A
386 392anti-parallel
Strand 8
A
58 60anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
116 124parallel
Strand 3
A
185 194anti-parallel
Strand 4
A
333 344parallel
Strand 5
A
297 304anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 199first strand
Strand 2
A
348 350parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il