Analysis of interatomic Contacts of Structural Units in PDB entry:
1IRD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1IRD entry

There are 2 chains in PDB entry 1IRD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1ARG 141
B
 VAL 201HIS 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1IRD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 16Right-handed alpha
Helix 2
2
A
17 19Right-handed 310
Helix 3
3
A
20 36Right-handed alpha
Helix 4
4
A
37 43Right-handed 310
Helix 5
5
A
52 72Right-handed alpha
Helix 6
6
A
75 80Right-handed alpha
Helix 7
7
A
80 90Right-handed alpha
Helix 8
8
A
95 113Right-handed alpha
Helix 9
9
A
118 137Right-handed alpha
Helix 10
10
B
204 216Right-handed alpha
Helix 11
11
B
222 235Right-handed alpha
Helix 12
12
B
236 246Right-handed 310
Helix 13
13
B
250 257Right-handed alpha
Helix 14
14
B
257 277Right-handed alpha
Helix 15
15
B
280 294Right-handed alpha
Helix 16
16
B
300 319Right-handed alpha
Helix 17
17
B
320 322Right-handed 310
Helix 18
18
B
323 342Right-handed alpha
Helix 19
19
B
343 346Right-handed 310
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There are no sheets in PDB entry 1IRD
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il