Analysis of interatomic Contacts of Structural Units in PDB entry:
1J1D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J1D entry

There are 6 chains in PDB entry 1J1D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 161
B
 GLN 202ASN 271
C
 ALA 35GLY 160
D
 ASP 2GLU 161
E
 LYS 200VAL 274
F
 LYS 37ARG 162
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 1J1D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 11Right-handed alpha
Helix 2
2
A
13 28Right-handed alpha
Helix 3
3
A
37 48Right-handed alpha
Helix 4
4
A
53 63Right-handed alpha
Helix 5
5
A
73 84Right-handed alpha
Helix 6
6
A
93 105Right-handed alpha
Helix 7
7
A
114 124Right-handed alpha
Helix 8
8
A
129 141Right-handed alpha
Helix 9
9
A
149 158Right-handed alpha
Helix 10
10
B
203 222Right-handed alpha
Helix 11
11
B
225 270Right-handed alpha
Helix 12
12
C
42 80Right-handed alpha
Helix 13
13
C
89 136Right-handed alpha
Helix 14
14
C
150 159Right-handed alpha
Helix 15
15
D
3 11Right-handed alpha
Helix 16
16
D
13 28Right-handed alpha
Helix 17
17
D
37 50Right-handed alpha
Helix 18
18
D
53 65Right-handed alpha
Helix 19
19
D
73 85Right-handed alpha
Helix 20
20
D
93 105Right-handed alpha
Helix 21
21
D
114 123Right-handed alpha
Helix 22
22
D
129 141Right-handed alpha
Helix 23
23
D
150 157Right-handed alpha
Helix 24
24
E
201 222Right-handed alpha
Helix 25
25
E
225 271Right-handed alpha
Helix 26
26
F
42 80Right-handed alpha
Helix 27
27
F
89 137Right-handed alpha
Helix 28
28
F
150 159Right-handed alpha
Helix 29
29
F
160 162Right-handed 310
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There are 2 sheets in PDB entry 1J1D. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
147 148anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
111 113first strand
Strand 2
D
147 149anti-parallel
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