Analysis of interatomic Contacts of Structural Units in PDB entry:
1J2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J2J entry

There are 2 chains in PDB entry 1J2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 16GLN 180
B
ILE 168MET 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1J2J. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
29 40Right-handed alpha
Helix 2
2
A
71 82Right-handed 310
Helix 3
3
A
96 98Right-handed 310
Helix 4
4
A
99 112Right-handed alpha
Helix 5
5
A
113 117Right-handed 310
Helix 6
6
A
135 144Right-handed alpha
Helix 7
7
A
145 148Right-handed 310
Helix 8
8
A
165 179Right-handed alpha
Helix 9
9
B
171 183Right-handed alpha
Helix 10
10
B
186 206Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1J2J.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
51 58first strand
Strand 2
A
61 68anti-parallel
Strand 3
A
17 23parallel
Strand 4
A
87 93parallel
Strand 5
A
120 126parallel
Strand 6
A
153 157parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il