Analysis of interatomic Contacts of Structural Units in PDB entry:
1J33


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J33 entry

There is 1 chain in PDB entry 1J33 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3GLY 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1J33. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 14Right-handed alpha
Helix 2
2
A
23 38Right-handed alpha
Helix 3
3
A
56 62Right-handed 310
Helix 4
4
A
69 81Right-handed alpha
Helix 5
5
A
83 92Right-handed alpha
Helix 6
6
A
132 153Right-handed alpha
Helix 7
7
A
166 180Right-handed alpha
Helix 8
8
A
182 187Right-handed alpha
Helix 9
9
A
194 210Right-handed alpha
Helix 10
10
A
217 226Right-handed alpha
Helix 11
11
A
227 243Right-handed alpha
Helix 12
12
A
251 265Right-handed alpha
Helix 13
13
A
266 270Right-handed 310
Helix 14
14
A
280 291Right-handed alpha
Helix 15
15
A
305 321Right-handed alpha
Helix 16
16
A
322 324Right-handed 310
Helix 17
17
A
326 331Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1J33.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 115first strand
Strand 2
A
94 102parallel
Strand 3
A
47 54parallel
Strand 4
A
157 163parallel
Strand 5
A
247 249parallel
Strand 6
A
272 274parallel
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