Analysis of interatomic Contacts of Structural Units in PDB entry:
1J36


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J36 entry

There are 2 chains in PDB entry 1J36 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 23HIS 620
B
 ILE 23HIS 620
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 1J36. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 51Right-handed alpha
Helix 2
2
A
55 78Right-handed alpha
Helix 3
3
A
79 82Right-handed 310
Helix 4
4
A
84 88Right-handed 310
Helix 5
5
A
92 102Right-handed alpha
Helix 6
6
A
104 108Right-handed 310
Helix 7
7
A
109 129Right-handed alpha
Helix 8
8
A
147 156Right-handed alpha
Helix 9
9
A
158 174Right-handed alpha
Helix 10
10
A
177 195Right-handed alpha
Helix 11
11
A
199 207Right-handed alpha
Helix 12
12
A
212 229Right-handed alpha
Helix 13
13
A
231 244Right-handed alpha
Helix 14
14
A
267 269Right-handed 310
Helix 15
15
A
270 275Right-handed alpha
Helix 16
16
A
285 292Right-handed alpha
Helix 17
17
A
295 309Right-handed alpha
Helix 18
18
A
316 323Right-handed alpha
Helix 19
19
A
358 379Right-handed alpha
Helix 20
20
A
382 386Right-handed 310
Helix 21
21
A
389 407Right-handed alpha
Helix 22
22
A
407 414Right-handed alpha
Helix 23
23
A
427 436Right-handed alpha
Helix 24
24
A
440 457Right-handed alpha
Helix 25
25
A
461 463Right-handed 310
Helix 26
26
A
464 478Right-handed alpha
Helix 27
27
A
491 494Right-handed 310
Helix 28
28
A
495 501Right-handed alpha
Helix 29
29
A
504 525Right-handed alpha
Helix 30
30
A
536 540Right-handed 310
Helix 31
31
A
545 557Right-handed alpha
Helix 32
32
A
563 573Right-handed alpha
Helix 33
33
A
581 586Right-handed alpha
Helix 34
34
A
586 600Right-handed alpha
Helix 35
35
B
25 51Right-handed alpha
Helix 36
36
B
55 80Right-handed alpha
Helix 37
37
B
84 88Right-handed 310
Helix 38
38
B
92 102Right-handed alpha
Helix 39
39
B
104 108Right-handed 310
Helix 40
40
B
109 129Right-handed alpha
Helix 41
41
B
147 156Right-handed alpha
Helix 42
42
B
158 174Right-handed alpha
Helix 43
43
B
177 195Right-handed alpha
Helix 44
44
B
199 207Right-handed alpha
Helix 45
45
B
212 229Right-handed alpha
Helix 46
46
B
231 244Right-handed alpha
Helix 47
47
B
267 269Right-handed 310
Helix 48
48
B
270 275Right-handed alpha
Helix 49
49
B
285 292Right-handed alpha
Helix 50
50
B
295 309Right-handed alpha
Helix 51
51
B
316 323Right-handed alpha
Helix 52
52
B
358 379Right-handed alpha
Helix 53
53
B
382 386Right-handed 310
Helix 54
54
B
389 407Right-handed alpha
Helix 55
55
B
407 414Right-handed alpha
Helix 56
56
B
427 436Right-handed alpha
Helix 57
57
B
440 457Right-handed alpha
Helix 58
58
B
461 463Right-handed 310
Helix 59
59
B
464 478Right-handed alpha
Helix 60
60
B
491 494Right-handed 310
Helix 61
61
B
495 500Right-handed alpha
Helix 62
62
B
504 525Right-handed alpha
Helix 63
63
B
536 540Right-handed 310
Helix 64
64
B
545 557Right-handed alpha
Helix 65
65
B
563 573Right-handed alpha
Helix 66
66
B
581 586Right-handed alpha
Helix 67
67
B
586 600Right-handed alpha
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There are 6 sheets in PDB entry 1J36. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
143 144anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 255first strand
Strand 2
A
479 480parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 342first strand
Strand 2
A
349 352anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 486first strand
Strand 2
A
612 613parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 255first strand
Strand 2
B
479 480parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 342first strand
Strand 2
B
349 352anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il