Analysis of interatomic Contacts of Structural Units in PDB entry:
1J5O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J5O entry

There are 6 chains in PDB entry 1J5O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
T
A 801 C 819
P
G 821 A 838
A
PRO 1LYS 558
B
PRO 1GLU 430
L
ASP 1CYS 214
H
GLN 1ILE 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1J5O. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
27 45Right-handed alpha
Helix 2
2
A
77 84Right-handed alpha
Helix 3
3
A
113 118Right-handed alpha
Helix 4
4
A
121 126Right-handed alpha
Helix 5
5
A
154 175Right-handed alpha
Helix 6
6
A
194 212Right-handed alpha
Helix 7
10
A
363 384Right-handed alpha
Helix 8
11
A
394 405Right-handed alpha
Helix 9
12
A
473 488Right-handed alpha
Helix 10
13
A
499 508Right-handed alpha
Helix 11
14
A
515 528Right-handed alpha
Helix 12
15
A
544 553Right-handed alpha
Helix 13
16
B
27 44Right-handed alpha
Helix 14
17
B
77 84Right-handed alpha
Helix 15
18
B
87 94Right-handed alpha
Helix 16
19
B
113 118Right-handed alpha
Helix 17
20
B
122 129Right-handed 310
Helix 18
21
B
134 138Right-handed 310
Helix 19
22
B
154 174Right-handed alpha
Helix 20
23
B
194 212Right-handed alpha
Helix 21
24
B
213 215Right-handed 310
Helix 22
25
B
227 231Right-handed 310
Helix 23
29
B
363 382Right-handed alpha
Helix 24
30
B
394 402Right-handed alpha
Helix 25
31
B
403 406Right-handed 310
Helix 26
32
B
420 425Right-handed alpha
Helix 27
33
L
121 126Right-handed alpha
Helix 28
34
L
182 189Right-handed alpha
Helix 29
35
H
65 67Right-handed 310
Helix 30
36
H
75 77Right-handed 310
Helix 31
37
H
88 92Right-handed 310
Helix 32
38
H
196 201Right-handed alpha
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There are 19 sheets in PDB entry 1J5O. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
47 49first strand
Strand 2
A
142 146anti-parallel
Strand 3
A
129 132anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
105 110first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
179 183anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
227 229first strand
Strand 2
A
232 234anti-parallel
Strand 3
A
316 317anti-parallel
Strand 4
A
347 354first strand
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
337 344anti-parallel
Strand 2
A
388 391parallel
Strand 3
A
414 416parallel
Strand 4
A
440 444first strand
Strand 5
A
452 459anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
468 470anti-parallel
Strand 2
A
494 497first strand
Strand 3
A
532 535parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
47 50first strand
Strand 2
B
142 146anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
130 132anti-parallel
Strand 2
B
106 110first strand
Strand 3
B
186 191anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
178 183anti-parallel
Strand 2
B
347 354first strand
Strand 3
B
337 344anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
326 330anti-parallel
Strand 2
B
388 391parallel
Strand 3
B
414 416parallel
Strand 4
L
5 6first strand
Strand 5
L
19 24anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
70 75anti-parallel
Strand 2
L
62 67anti-parallel
Strand 3
L
10 13first strand
Strand 4
L
103 106parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
53 54first strand
Strand 2
L
44 49anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
33 38anti-parallel
Strand 2
L
85 90anti-parallel
Strand 3
L
114 118first strand
Strand 4
L
131 139anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
173 180anti-parallel
Strand 2
L
159 163anti-parallel
Strand 3
L
145 149first strand
Strand 4
L
191 197anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
204 210anti-parallel
Strand 2
H
4 7first strand
Strand 3
H
18 24anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
79 84anti-parallel
Strand 2
H
69 74anti-parallel
Strand 3
H
11 12first strand
Strand 4
H
120 121parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
60 61first strand
Strand 2
H
48 54anti-parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
34 41anti-parallel
Strand 2
H
94 104anti-parallel
Strand 3
H
107 112anti-parallel
Strand 4
H
130 134first strand
Strand 5
H
145 155anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
185 194anti-parallel
Strand 2
H
173 180anti-parallel
Strand 3
H
161 164first strand
Strand 4
H
204 209anti-parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
214 219anti-parallel
Strand 2

0 0first strand
Strand 3

0 0first strand
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il