Analysis of interatomic Contacts of Structural Units in PDB entry:
1J71


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J71 entry

There are 2 chains in PDB entry 1J71 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LEU 334
B
 THR 336SER 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1J71. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 61Right-handed 310
Helix 2
2
A
66 70Right-handed 310
Helix 3
3
A
128 132Right-handed 310
Helix 4
4
A
140 148Right-handed alpha
Helix 5
5
A
227 239Right-handed alpha
Helix 6
6
A
300 305Right-handed alpha
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There are 4 sheets in PDB entry 1J71. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 15 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 188first strand
Strand 2
A
317 323anti-parallel
Strand 3
A
307 312anti-parallel
Strand 4
A
155 159anti-parallel
Strand 5
A
167 172anti-parallel
Strand 6
A
3 9anti-parallel
Strand 7
A
14 20anti-parallel
Strand 8
A
25 32anti-parallel
Strand 9
A
123 125parallel
Strand 10
A
38 47anti-parallel
Strand 11
A
104 117parallel
Strand 12
A
89 101anti-parallel
Strand 13
A
74 83anti-parallel
Strand 14
A
89 101anti-parallel
Strand 15
A
14 20anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 176first strand
Strand 2
A
331 333anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 264first strand
Strand 2
A
196 204anti-parallel
Strand 3
A
207 217anti-parallel
Strand 4
A
298 299parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 226first strand
Strand 2
A
291 293parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il