Analysis of interatomic Contacts of Structural Units in PDB entry:
1J89


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J89 entry

There are 5 chains in PDB entry 1J89 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4LYS 171
B
 LYS 4LYS 171
C
 LYS 4LYS 171
D
 LYS 4LYS 171
E
 LYS 4LYS 171
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1J89. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
59 63Right-handed 310
Helix 2
2
A
111 113Right-handed 310
Helix 3
3
A
142 146Right-handed 310
Helix 4
4
B
59 63Right-handed 310
Helix 5
5
B
111 113Right-handed 310
Helix 6
6
B
142 146Right-handed 310
Helix 7
7
C
59 63Right-handed 310
Helix 8
8
C
111 113Right-handed 310
Helix 9
9
C
142 146Right-handed 310
Helix 10
10
D
59 63Right-handed 310
Helix 11
11
D
111 113Right-handed 310
Helix 12
12
D
142 146Right-handed 310
Helix 13
13
E
59 63Right-handed 310
Helix 14
14
E
111 113Right-handed 310
Helix 15
15
E
142 146Right-handed 310
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There are 30 sheets in PDB entry 1J89. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
22 25anti-parallel
Strand 3
A
52 55anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
79 84parallel
Strand 3
A
64 66anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
44 45anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 92first strand
Strand 2
A
103 109anti-parallel
Strand 3
A
137 138anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 130first strand
Strand 2
A
115 122anti-parallel
Strand 3
A
147 155anti-parallel
Strand 4
A
158 161anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 130first strand
Strand 2
A
115 122anti-parallel
Strand 3
A
147 155anti-parallel
Strand 4
A
165 170anti-parallel
Strand 5
A
96 98parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
22 25anti-parallel
Strand 3
B
52 55anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
79 84parallel
Strand 3
B
64 66anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 41first strand
Strand 2
B
44 45anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 92first strand
Strand 2
B
103 109anti-parallel
Strand 3
B
137 138anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 130first strand
Strand 2
B
115 122anti-parallel
Strand 3
B
147 155anti-parallel
Strand 4
B
158 161anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 130first strand
Strand 2
B
115 122anti-parallel
Strand 3
B
147 155anti-parallel
Strand 4
B
165 170anti-parallel
Strand 5
B
96 98parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 10first strand
Strand 2
C
22 25anti-parallel
Strand 3
C
52 55anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 17first strand
Strand 2
C
79 84parallel
Strand 3
C
64 66anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 41first strand
Strand 2
C
44 45anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 92first strand
Strand 2
C
103 109anti-parallel
Strand 3
C
137 138anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 130first strand
Strand 2
C
115 122anti-parallel
Strand 3
C
147 155anti-parallel
Strand 4
C
158 161anti-parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 130first strand
Strand 2
C
115 122anti-parallel
Strand 3
C
147 155anti-parallel
Strand 4
C
165 170anti-parallel
Strand 5
C
96 98parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 10first strand
Strand 2
D
22 25anti-parallel
Strand 3
D
52 55anti-parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 17first strand
Strand 2
D
79 84parallel
Strand 3
D
64 66anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
40 41first strand
Strand 2
D
44 45anti-parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
88 92first strand
Strand 2
D
103 109anti-parallel
Strand 3
D
137 138anti-parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
125 130first strand
Strand 2
D
115 122anti-parallel
Strand 3
D
147 155anti-parallel
Strand 4
D
158 161anti-parallel
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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
125 130first strand
Strand 2
D
115 122anti-parallel
Strand 3
D
147 155anti-parallel
Strand 4
D
165 170anti-parallel
Strand 5
D
96 98parallel
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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
8 10first strand
Strand 2
E
22 25anti-parallel
Strand 3
E
52 55anti-parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
15 17first strand
Strand 2
E
79 84parallel
Strand 3
E
64 66anti-parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
40 41first strand
Strand 2
E
44 45anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
88 92first strand
Strand 2
E
103 109anti-parallel
Strand 3
E
137 138anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
125 130first strand
Strand 2
E
115 122anti-parallel
Strand 3
E
147 155anti-parallel
Strand 4
E
158 161anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
125 130first strand
Strand 2
E
115 122anti-parallel
Strand 3
E
147 155anti-parallel
Strand 4
E
165 170anti-parallel
Strand 5
E
96 98parallel
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