Analysis of interatomic Contacts of Structural Units in PDB entry:
1J8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J8V entry

There is 1 chain in PDB entry 1J8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1THR 602
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1J8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 7Right-handed 310
Helix 2
2
A
11 21Right-handed alpha
Helix 3
3
A
24 32Right-handed alpha
Helix 4
4
A
38 40Right-handed 310
Helix 5
5
A
41 48Right-handed alpha
Helix 6
6
A
66 83Right-handed alpha
Helix 7
7
A
111 117Right-handed alpha
Helix 8
8
A
120 137Right-handed alpha
Helix 9
9
A
158 162Right-handed 310
Helix 10
10
A
166 173Right-handed alpha
Helix 11
11
A
175 182Right-handed alpha
Helix 12
12
A
210 214Right-handed 310
Helix 13
13
A
214 218Right-handed 310
Helix 14
14
A
226 233Right-handed alpha
Helix 15
15
A
235 244Right-handed alpha
Helix 16
16
A
264 269Right-handed alpha
Helix 17
17
A
289 293Right-handed 310
Helix 18
18
A
299 311Right-handed alpha
Helix 19
19
A
320 334Right-handed alpha
Helix 20
20
A
338 356Right-handed alpha
Helix 21
21
A
365 372Right-handed 310
Helix 22
22
A
374 389Right-handed alpha
Helix 23
23
A
422 428Right-handed alpha
Helix 24
24
A
446 455Right-handed alpha
Helix 25
25
A
468 474Right-handed alpha
Helix 26
26
A
490 495Right-handed 310
Helix 27
27
A
505 516Right-handed alpha
Helix 28
28
A
530 537Right-handed alpha
Helix 29
29
A
550 558Right-handed alpha
Helix 30
30
A
574 578Right-handed 310
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There are 4 sheets in PDB entry 1J8V. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
91 94parallel
Strand 3
A
52 55parallel
Strand 4
A
33 36parallel
Strand 5
A
315 316parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 208first strand
Strand 2
A
248 251parallel
Strand 3
A
281 283parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
255 256parallel
Strand 3
A
259 260anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 394first strand
Strand 2
A
539 544anti-parallel
Strand 3
A
518 523parallel
Strand 4
A
480 485parallel
Strand 5
A
412 416parallel
Strand 6
A
460 464parallel
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