Analysis of interatomic Contacts of Structural Units in PDB entry:
1J9J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J9J entry

There are 2 chains in PDB entry 1J9J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 247
B
 MET 1ASP 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1J9J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 24Right-handed alpha
Helix 2
2
A
70 81Right-handed alpha
Helix 3
3
A
100 106Right-handed 310
Helix 4
4
A
107 119Right-handed alpha
Helix 5
5
A
135 150Right-handed alpha
Helix 6
6
A
151 155Right-handed 310
Helix 7
7
A
214 221Right-handed alpha
Helix 8
8
A
235 246Right-handed alpha
Helix 9
9
B
13 24Right-handed alpha
Helix 10
10
B
70 81Right-handed alpha
Helix 11
11
B
100 106Right-handed 310
Helix 12
12
B
107 119Right-handed alpha
Helix 13
13
B
135 148Right-handed alpha
Helix 14
14
B
151 155Right-handed 310
Helix 15
15
B
214 221Right-handed alpha
Helix 16
16
B
235 246Right-handed alpha
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There are 4 sheets in PDB entry 1J9J. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
62 67anti-parallel
Strand 3
A
28 34parallel
Strand 4
A
2 6parallel
Strand 5
A
89 96parallel
Strand 6
A
123 128parallel
Strand 7
A
160 165parallel
Strand 8
A
223 229anti-parallel
Strand 9
A
172 175parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 191first strand
Strand 2
A
197 206anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
62 67anti-parallel
Strand 3
B
28 34parallel
Strand 4
B
2 6parallel
Strand 5
B
89 96parallel
Strand 6
B
123 128parallel
Strand 7
B
160 165parallel
Strand 8
B
223 229anti-parallel
Strand 9
B
172 175parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 191first strand
Strand 2
B
197 206anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il