Analysis of interatomic Contacts of Structural Units in PDB entry:
1JB0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1JB0 entry

There are 12 chains in PDB entry 1JB0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 13	GLY 755
B	ALA 1	PHE 739
C	ALA 1	TYR 80
D	THR 1	PRO 138
E	VAL 1	ALA 69
F	ASP 1	ARG 141
I	MET 1	ALA 38
J	MET 1	LEU 41
K	ILE 20	LEU 77
L	LEU 4	ASN 154
M	MET 1	LYS 31
X	PRO 7	ALA 35

There are116 helices in PDB entry 1JB0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	35	39	Right-handed 310
Helix 2	2	A	45	54	Right-handed alpha
Helix 3	3	A	57	61	Right-handed 310
Helix 4	4	A	64	97	Right-handed alpha
Helix 5	5	A	99	106	Right-handed alpha
Helix 6	6	A	122	127	Right-handed 310
Helix 7	7	A	142	150	Right-handed alpha
Helix 8	8	A	154	182	Right-handed alpha
Helix 9	9	A	186	191	Right-handed alpha
Helix 10	10	A	192	203	Right-handed alpha
Helix 11	11	A	203	219	Right-handed alpha
Helix 12	12	A	219	228	Right-handed alpha
Helix 13	13	A	240	245	Right-handed alpha
Helix 14	14	A	245	252	Right-handed alpha
Helix 15	15	A	271	276	Right-handed 310
Helix 16	16	A	293	312	Right-handed alpha
Helix 17	17	A	324	332	Right-handed alpha
Helix 18	18	A	343	351	Right-handed alpha
Helix 19	19	A	351	377	Right-handed alpha
Helix 20	20	A	386	419	Right-handed alpha
Helix 21	21	A	421	426	Right-handed 310
Helix 22	22	A	428	435	Right-handed alpha
Helix 23	23	A	436	454	Right-handed alpha
Helix 24	24	A	455	469	Right-handed alpha
Helix 25	25	A	470	474	Right-handed 310
Helix 26	26	A	484	497	Right-handed alpha
Helix 27	27	A	532	559	Right-handed alpha
Helix 28	28	A	568	573	Right-handed alpha
Helix 29	29	A	590	621	Right-handed alpha
Helix 30	30	A	638	643	Right-handed alpha
Helix 31	31	A	645	652	Right-handed alpha
Helix 32	32	A	653	658	Right-handed alpha
Helix 33	33	A	658	664	Right-handed alpha
Helix 34	34	A	669	692	Right-handed alpha
Helix 35	35	A	693	711	Right-handed alpha
Helix 36	36	A	723	755	Right-handed alpha
Helix 37	37	B	8	13	Right-handed alpha
Helix 38	38	B	17	27	Right-handed alpha
Helix 39	39	B	29	33	Right-handed 310
Helix 40	40	B	37	71	Right-handed alpha
Helix 41	41	B	72	79	Right-handed alpha
Helix 42	42	B	96	104	Right-handed alpha
Helix 43	43	B	118	126	Right-handed alpha
Helix 44	44	B	130	155	Right-handed alpha
Helix 45	45	B	156	161	Right-handed 310
Helix 46	46	B	163	168	Right-handed alpha
Helix 47	47	B	169	180	Right-handed alpha
Helix 48	48	B	182	196	Right-handed alpha
Helix 49	49	B	196	202	Right-handed alpha
Helix 50	50	B	210	214	Right-handed 310
Helix 51	51	B	221	226	Right-handed alpha
Helix 52	52	B	228	234	Right-handed 310
Helix 53	53	B	268	287	Right-handed alpha
Helix 54	54	B	299	306	Right-handed alpha
Helix 55	55	B	316	320	Right-handed 310
Helix 56	56	B	324	332	Right-handed alpha
Helix 57	57	B	332	358	Right-handed alpha
Helix 58	58	B	363	366	Right-handed 310
Helix 59	59	B	367	400	Right-handed alpha
Helix 60	60	B	403	407	Right-handed 310
Helix 61	61	B	409	417	Right-handed alpha
Helix 62	62	B	417	449	Right-handed alpha
Helix 63	63	B	451	455	Right-handed 310
Helix 64	64	B	460	470	Right-handed alpha
Helix 65	65	B	472	476	Right-handed 310
Helix 66	66	B	486	491	Right-handed alpha
Helix 67	67	B	499	509	Right-handed alpha
Helix 68	68	B	519	546	Right-handed alpha
Helix 69	69	B	555	560	Right-handed 310
Helix 70	70	B	568	572	Right-handed 310
Helix 71	71	B	577	610	Right-handed alpha
Helix 72	72	B	612	619	Right-handed alpha
Helix 73	73	B	621	629	Right-handed alpha
Helix 74	74	B	629	634	Right-handed alpha
Helix 75	75	B	635	635	Right-handed 310
Helix 76	76	B	636	639	Right-handed 310
Helix 77	77	B	649	672	Right-handed alpha
Helix 78	78	B	673	690	Right-handed alpha
Helix 79	79	B	693	697	Right-handed 310
Helix 80	80	B	707	737	Right-handed alpha
Helix 81	81	C	14	20	Right-handed alpha
Helix 82	82	C	43	47	Right-handed 310
Helix 83	83	C	51	57	Right-handed alpha
Helix 84	84	D	19	24	Right-handed alpha
Helix 85	85	D	60	72	Right-handed alpha
Helix 86	86	D	73	76	Right-handed 310
Helix 87	87	D	118	122	Right-handed 310
Helix 88	88	D	124	129	Right-handed alpha
Helix 89	89	E	61	63	Right-handed 310
Helix 90	90	F	1	5	Right-handed 310
Helix 91	91	F	11	20	Right-handed alpha
Helix 92	92	F	29	39	Right-handed alpha
Helix 93	93	F	56	60	Right-handed 310
Helix 94	94	F	63	90	Right-handed alpha
Helix 95	95	F	95	100	Right-handed alpha
Helix 96	96	F	102	112	Right-handed alpha
Helix 97	97	F	115	126	Right-handed alpha
Helix 98	98	F	132	136	Right-handed 310
Helix 99	99	I	9	20	Right-handed alpha
Helix 100	100	I	20	36	Right-handed alpha
Helix 101	101	J	1	8	Right-handed alpha
Helix 102	102	J	10	33	Right-handed alpha
Helix 103	103	K	20	32	Right-handed alpha
Helix 104	104	K	58	60	Right-handed 310
Helix 105	105	K	61	74	Right-handed alpha
Helix 106	106	L	9	11	Right-handed 310
Helix 107	107	L	19	24	Right-handed alpha
Helix 108	108	L	24	33	Right-handed alpha
Helix 109	109	L	42	59	Right-handed alpha
Helix 110	110	L	59	66	Right-handed alpha
Helix 111	111	L	73	101	Right-handed alpha
Helix 112	112	L	109	112	Right-handed 310
Helix 113	113	L	113	141	Right-handed alpha
Helix 114	114	L	141	151	Right-handed alpha
Helix 115	115	M	4	30	Right-handed alpha
Helix 116	116	X	10	32	Right-handed alpha

There are 13 sheets in PDB entry 1JB0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	18	first strand
Strand 2	A	183	185	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	114	first strand
Strand 2	A	134	138	anti-parallel
Strand 3	A	128	131	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	520	first strand
Strand 2	A	523	526	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	625	first strand
Strand 2	A	631	633	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	89	first strand
Strand 2	B	112	114	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	642	first strand
Strand 2	B	645	646	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	67	first strand
Strand 2	C	3	7	anti-parallel
Strand 3	D	114	115	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	29	first strand
Strand 2	C	37	40	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	58	first strand
Strand 2	D	26	33	anti-parallel
Strand 3	D	81	85	anti-parallel
Strand 4	D	91	95	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	40	first strand
Strand 2	D	46	49	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	60	first strand
Strand 2	E	36	39	anti-parallel
Strand 3	E	20	26	anti-parallel
Strand 4	E	6	9	anti-parallel
Strand 5	E	65	67	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	7	first strand
Strand 2	F	42	43	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	6	7	first strand
Strand 2	L	17	18	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1JB0

Analysis of interatomic Contacts of Structural Units in PDB entry:
1JB0