Analysis of interatomic Contacts of Structural Units in PDB entry:
1JBQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JBQ entry

There are 6 chains in PDB entry 1JBQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 43LEU 397
B
 TRP 43LEU 397
C
 TRP 43LEU 397
D
 TRP 43LEU 397
E
 TRP 43GLU 399
F
 TRP 43LEU 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are108 helices in PDB entry 1JBQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
59 63Right-handed 310
Helix 2
2
A
79 84Right-handed 310
Helix 3
3
A
94 99Right-handed alpha
Helix 4
4
A
111 113Right-handed 310
Helix 5
5
A
118 133Right-handed alpha
Helix 6
6
A
148 162Right-handed alpha
Helix 7
7
A
174 184Right-handed alpha
Helix 8
8
A
202 214Right-handed alpha
Helix 9
9
A
226 235Right-handed alpha
Helix 10
10
A
235 244Right-handed alpha
Helix 11
11
A
258 272Right-handed alpha
Helix 12
12
A
290 295Right-handed 310
Helix 13
13
A
316 320Right-handed 310
Helix 14
14
A
327 342Right-handed alpha
Helix 15
15
A
347 361Right-handed alpha
Helix 16
16
A
362 364Right-handed 310
Helix 17
17
A
378 382Right-handed 310
Helix 18
18
A
387 394Right-handed alpha
Helix 19
19
B
59 63Right-handed 310
Helix 20
20
B
79 84Right-handed 310
Helix 21
21
B
94 99Right-handed alpha
Helix 22
22
B
111 113Right-handed 310
Helix 23
23
B
118 133Right-handed alpha
Helix 24
24
B
148 162Right-handed alpha
Helix 25
25
B
174 184Right-handed alpha
Helix 26
26
B
202 214Right-handed alpha
Helix 27
27
B
226 235Right-handed alpha
Helix 28
28
B
235 244Right-handed alpha
Helix 29
29
B
258 272Right-handed alpha
Helix 30
30
B
290 295Right-handed 310
Helix 31
31
B
316 320Right-handed 310
Helix 32
32
B
327 342Right-handed alpha
Helix 33
33
B
347 361Right-handed alpha
Helix 34
34
B
362 364Right-handed 310
Helix 35
35
B
378 382Right-handed 310
Helix 36
36
B
387 394Right-handed alpha
Helix 37
37
C
59 63Right-handed 310
Helix 38
38
C
79 84Right-handed 310
Helix 39
39
C
94 99Right-handed alpha
Helix 40
40
C
111 113Right-handed 310
Helix 41
41
C
118 133Right-handed alpha
Helix 42
42
C
148 162Right-handed alpha
Helix 43
43
C
174 184Right-handed alpha
Helix 44
44
C
202 214Right-handed alpha
Helix 45
45
C
226 235Right-handed alpha
Helix 46
46
C
235 245Right-handed alpha
Helix 47
47
C
258 272Right-handed alpha
Helix 48
48
C
290 295Right-handed 310
Helix 49
49
C
316 320Right-handed 310
Helix 50
50
C
327 342Right-handed alpha
Helix 51
51
C
347 361Right-handed alpha
Helix 52
52
C
362 364Right-handed 310
Helix 53
53
C
378 382Right-handed 310
Helix 54
54
C
387 394Right-handed alpha
Helix 55
55
D
59 63Right-handed 310
Helix 56
56
D
79 84Right-handed 310
Helix 57
57
D
94 99Right-handed alpha
Helix 58
58
D
111 113Right-handed 310
Helix 59
59
D
118 133Right-handed alpha
Helix 60
60
D
148 162Right-handed alpha
Helix 61
61
D
174 184Right-handed alpha
Helix 62
62
D
202 214Right-handed alpha
Helix 63
63
D
226 235Right-handed alpha
Helix 64
64
D
235 245Right-handed alpha
Helix 65
65
D
258 272Right-handed alpha
Helix 66
66
D
290 295Right-handed 310
Helix 67
67
D
316 320Right-handed 310
Helix 68
68
D
327 342Right-handed alpha
Helix 69
69
D
347 361Right-handed alpha
Helix 70
70
D
362 364Right-handed 310
Helix 71
71
D
378 382Right-handed 310
Helix 72
72
D
387 394Right-handed alpha
Helix 73
73
E
59 63Right-handed 310
Helix 74
74
E
79 84Right-handed 310
Helix 75
75
E
94 99Right-handed alpha
Helix 76
76
E
111 113Right-handed 310
Helix 77
77
E
118 133Right-handed alpha
Helix 78
78
E
148 162Right-handed alpha
Helix 79
79
E
174 184Right-handed alpha
Helix 80
80
E
202 214Right-handed alpha
Helix 81
81
E
226 235Right-handed alpha
Helix 82
82
E
235 244Right-handed alpha
Helix 83
83
E
258 272Right-handed alpha
Helix 84
84
E
290 295Right-handed 310
Helix 85
85
E
316 320Right-handed 310
Helix 86
86
E
327 342Right-handed alpha
Helix 87
87
E
347 361Right-handed alpha
Helix 88
88
E
362 364Right-handed 310
Helix 89
89
E
378 382Right-handed 310
Helix 90
90
E
387 394Right-handed alpha
Helix 91
91
F
59 63Right-handed 310
Helix 92
92
F
79 84Right-handed 310
Helix 93
93
F
94 99Right-handed alpha
Helix 94
94
F
111 113Right-handed 310
Helix 95
95
F
118 133Right-handed alpha
Helix 96
96
F
148 162Right-handed alpha
Helix 97
97
F
174 184Right-handed alpha
Helix 98
98
F
202 214Right-handed alpha
Helix 99
99
F
226 235Right-handed alpha
Helix 100
100
F
235 245Right-handed alpha
Helix 101
101
F
258 272Right-handed alpha
Helix 102
102
F
291 295Right-handed 310
Helix 103
103
F
316 320Right-handed 310
Helix 104
104
F
327 342Right-handed alpha
Helix 105
105
F
347 361Right-handed alpha
Helix 106
106
F
362 364Right-handed 310
Helix 107
107
F
378 382Right-handed 310
Helix 108
108
F
387 394Right-handed alpha
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There are 12 sheets in PDB entry 1JBQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
B
89 91parallel
Strand 3
B
104 109anti-parallel
Strand 4
B
369 374parallel
Strand 5
B
250 254parallel
Strand 6
B
276 282parallel
Strand 7
B
322 326parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 326first strand
Strand 2
A
276 282parallel
Strand 3
A
250 254parallel
Strand 4
A
369 374parallel
Strand 5
A
104 109parallel
Strand 6
A
89 91anti-parallel
Strand 7
B
76 77parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 190first strand
Strand 2
A
164 169parallel
Strand 3
A
141 145parallel
Strand 4
A
217 218parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 190first strand
Strand 2
B
164 169parallel
Strand 3
B
141 145parallel
Strand 4
B
217 218parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 77first strand
Strand 2
D
89 91parallel
Strand 3
D
104 109anti-parallel
Strand 4
D
369 374parallel
Strand 5
D
250 254parallel
Strand 6
D
276 282parallel
Strand 7
D
322 326parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
322 326first strand
Strand 2
C
276 282parallel
Strand 3
C
250 254parallel
Strand 4
C
369 374parallel
Strand 5
C
104 109parallel
Strand 6
C
89 91anti-parallel
Strand 7
D
76 77parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 190first strand
Strand 2
C
164 169parallel
Strand 3
C
141 145parallel
Strand 4
C
217 218parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
187 190first strand
Strand 2
D
164 169parallel
Strand 3
D
141 145parallel
Strand 4
D
217 218parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
76 77first strand
Strand 2
F
89 91parallel
Strand 3
F
104 109anti-parallel
Strand 4
F
369 374parallel
Strand 5
F
250 254parallel
Strand 6
F
276 282parallel
Strand 7
F
322 326parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
322 326first strand
Strand 2
E
276 282parallel
Strand 3
E
250 254parallel
Strand 4
E
369 374parallel
Strand 5
E
104 109parallel
Strand 6
E
89 91anti-parallel
Strand 7
F
76 77parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
187 190first strand
Strand 2
E
164 169parallel
Strand 3
E
141 145parallel
Strand 4
E
217 218parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
187 190first strand
Strand 2
F
164 169parallel
Strand 3
F
141 145parallel
Strand 4
F
217 218parallel
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