Analysis of interatomic Contacts of Structural Units in PDB entry:
1JCS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JCS entry

There are 3 chains in PDB entry 1JCS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 55VAL 377
B
 PRO 17PHE 423
C
 THR 1MET 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 1JCS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 69Right-handed 310
Helix 2
2
A
69 73Right-handed 310
Helix 3
3
A
93 110Right-handed alpha
Helix 4
4
A
113 127Right-handed alpha
Helix 5
5
A
130 144Right-handed alpha
Helix 6
6
A
147 162Right-handed alpha
Helix 7
7
A
165 180Right-handed alpha
Helix 8
8
A
184 196Right-handed alpha
Helix 9
9
A
199 214Right-handed alpha
Helix 10
10
A
218 230Right-handed alpha
Helix 11
11
A
233 247Right-handed alpha
Helix 12
12
A
252 270Right-handed alpha
Helix 13
13
A
273 285Right-handed alpha
Helix 14
14
A
288 291Right-handed 310
Helix 15
15
A
292 301Right-handed alpha
Helix 16
16
A
302 307Right-handed alpha
Helix 17
17
A
308 325Right-handed alpha
Helix 18
18
A
329 347Right-handed alpha
Helix 19
19
A
349 351Right-handed 310
Helix 20
20
A
352 368Right-handed alpha
Helix 21
21
A
369 373Right-handed 310
Helix 22
22
B
23 27Right-handed 310
Helix 23
23
B
27 34Right-handed 310
Helix 24
24
B
42 66Right-handed alpha
Helix 25
25
B
74 86Right-handed alpha
Helix 26
26
B
90 97Right-handed 310
Helix 27
27
B
99 114Right-handed alpha
Helix 28
28
B
119 134Right-handed alpha
Helix 29
29
B
149 164Right-handed alpha
Helix 30
30
B
165 172Right-handed alpha
Helix 31
31
B
173 185Right-handed alpha
Helix 32
32
B
200 214Right-handed alpha
Helix 33
33
B
224 232Right-handed alpha
Helix 34
34
B
248 263Right-handed alpha
Helix 35
35
B
264 268Right-handed 310
Helix 36
36
B
269 279Right-handed alpha
Helix 37
37
B
299 304Right-handed alpha
Helix 38
38
B
306 318Right-handed alpha
Helix 39
39
B
331 343Right-handed alpha
Helix 40
40
B
359 374Right-handed alpha
Helix 41
41
B
389 393Right-handed 310
Helix 42
42
B
404 416Right-handed alpha
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There are 2 sheets in PDB entry 1JCS. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
B
88 89parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
375 378first strand
Strand 2
B
381 384anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il