Analysis of interatomic Contacts of Structural Units in PDB entry:
1JDE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JDE entry

There is 1 chain in PDB entry 1JDE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LYS 874
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 1JDE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 20Right-handed alpha
Helix 2
2
A
20 33Right-handed alpha
Helix 3
3
A
43 52Right-handed alpha
Helix 4
4
A
58 68Right-handed alpha
Helix 5
5
A
68 76Right-handed alpha
Helix 6
6
A
112 123Right-handed alpha
Helix 7
7
A
125 144Right-handed alpha
Helix 8
8
A
149 161Right-handed alpha
Helix 9
9
A
167 171Right-handed 310
Helix 10
10
A
172 191Right-handed alpha
Helix 11
11
A
199 212Right-handed alpha
Helix 12
12
A
217 227Right-handed alpha
Helix 13
13
A
277 282Right-handed alpha
Helix 14
14
A
293 298Right-handed alpha
Helix 15
15
A
300 317Right-handed alpha
Helix 16
16
A
342 356Right-handed alpha
Helix 17
17
A
360 367Right-handed alpha
Helix 18
18
A
369 378Right-handed 310
Helix 19
19
A
382 387Right-handed alpha
Helix 20
20
A
410 416Right-handed alpha
Helix 21
21
A
432 434Right-handed 310
Helix 22
22
A
435 440Right-handed alpha
Helix 23
23
A
454 464Right-handed alpha
Helix 24
24
A
518 532Right-handed alpha
Helix 25
25
A
542 552Right-handed alpha
Helix 26
26
A
563 568Right-handed alpha
Helix 27
27
A
571 573Right-handed 310
Helix 28
28
A
574 579Right-handed alpha
Helix 29
29
A
583 610Right-handed alpha
Helix 30
30
A
622 627Right-handed 310
Helix 31
31
A
631 640Right-handed alpha
Helix 32
32
A
644 654Right-handed alpha
Helix 33
33
A
667 671Right-handed 310
Helix 34
34
A
673 694Right-handed alpha
Helix 35
35
A
710 729Right-handed alpha
Helix 36
36
A
746 752Right-handed alpha
Helix 37
37
A
752 757Right-handed alpha
Helix 38
38
A
767 776Right-handed alpha
Helix 39
39
A
782 792Right-handed alpha
Helix 40
40
A
807 823Right-handed alpha
Helix 41
41
A
832 836Right-handed 310
Helix 42
42
A
839 848Right-handed alpha
Helix 43
43
A
858 874Right-handed alpha
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There are 6 sheets in PDB entry 1JDE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
39 42anti-parallel
Strand 3
A
237 241anti-parallel
Strand 4
A
89 93anti-parallel
Strand 5
A
105 109anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 290first strand
Strand 2
A
266 274anti-parallel
Strand 3
A
252 259anti-parallel
Strand 4
A
321 326anti-parallel
Strand 5
A
331 335anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 381first strand
Strand 2
A
512 513anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 468first strand
Strand 2
A
444 447parallel
Strand 3
A
424 428parallel
Strand 4
A
404 408parallel
Strand 5
A
495 497anti-parallel
Strand 6
A
503 504anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 485first strand
Strand 2
A
488 489anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 540first strand
Strand 2
A
557 560parallel
Strand 3
A
614 617parallel
Strand 4
A
702 705parallel
Strand 5
A
739 743parallel
Strand 6
A
762 765parallel
Strand 7
A
827 830parallel
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