Analysis of interatomic Contacts of Structural Units in PDB entry:
1JEY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JEY entry

There are 4 chains in PDB entry 1JEY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 G 1 C 18
D
 G 4 C 34
A
 GLY 34TYR 534
B
 ASN 6LYS 545
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 1JEY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 50Right-handed 310
Helix 2
2
A
58 77Right-handed alpha
Helix 3
3
A
112 121Right-handed alpha
Helix 4
4
A
123 136Right-handed alpha
Helix 5
5
A
142 156Right-handed alpha
Helix 6
6
A
179 197Right-handed alpha
Helix 7
7
A
216 220Right-handed 310
Helix 8
8
A
238 251Right-handed alpha
Helix 9
9
A
312 314Right-handed 310
Helix 10
10
A
330 337Right-handed alpha
Helix 11
11
A
354 356Right-handed 310
Helix 12
12
A
357 361Right-handed 310
Helix 13
13
A
377 392Right-handed alpha
Helix 14
14
A
439 442Right-handed 310
Helix 15
15
A
455 469Right-handed alpha
Helix 16
16
A
480 495Right-handed alpha
Helix 17
17
A
510 519Right-handed alpha
Helix 18
18
A
520 530Right-handed alpha
Helix 19
19
B
17 22Right-handed 310
Helix 20
20
B
29 48Right-handed alpha
Helix 21
21
B
87 96Right-handed alpha
Helix 22
22
B
106 122Right-handed alpha
Helix 23
23
B
146 157Right-handed alpha
Helix 24
24
B
198 217Right-handed alpha
Helix 25
25
B
218 222Right-handed 310
Helix 26
26
B
227 231Right-handed alpha
Helix 27
27
B
237 241Right-handed 310
Helix 28
28
B
306 308Right-handed 310
Helix 29
29
B
324 332Right-handed alpha
Helix 30
30
B
349 351Right-handed 310
Helix 31
31
B
352 356Right-handed 310
Helix 32
32
B
370 387Right-handed alpha
Helix 33
33
B
426 429Right-handed 310
Helix 34
34
B
447 461Right-handed alpha
Helix 35
35
B
478 482Right-handed 310
Helix 36
36
B
484 500Right-handed alpha
Helix 37
37
B
509 517Right-handed alpha
Helix 38
38
B
519 537Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 1JEY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 109first strand
Strand 2
A
82 88anti-parallel
Strand 3
A
35 43parallel
Strand 4
A
161 170parallel
Strand 5
A
198 204parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 262first strand
Strand 2
A
268 274anti-parallel
Strand 3
A
366 370anti-parallel
Strand 4
A
431 436anti-parallel
Strand 5
A
409 416anti-parallel
Strand 6
A
394 401anti-parallel
Strand 7
A
344 352anti-parallel
Strand 8
A
257 262parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 289first strand
Strand 2
B
310 316anti-parallel
Strand 3
B
319 322anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 304first strand
Strand 2
B
289 297anti-parallel
Strand 3
B
304 305anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 329first strand
Strand 2
A
316 322anti-parallel
Strand 3
B
277 280anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 376first strand
Strand 2
B
540 541anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 420first strand
Strand 2
A
426 428anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 84first strand
Strand 2
B
53 59anti-parallel
Strand 3
B
8 15parallel
Strand 4
B
129 135parallel
Strand 5
B
159 165parallel
Strand 6
B
224 226parallel
Back to list of sheets
Back to top of page

There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 253first strand
Strand 2
B
257 267anti-parallel
Strand 3
B
357 366anti-parallel
Strand 4
B
417 423anti-parallel
Strand 5
B
404 412anti-parallel
Strand 6
B
389 396anti-parallel
Strand 7
B
339 347anti-parallel
Strand 8
B
247 253parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
464 465first strand
Strand 2
B
474 475anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il