Analysis of interatomic Contacts of Structural Units in PDB entry:
1JLJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JLJ entry

There are 3 chains in PDB entry 1JLJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 13ASP 181
B
 HIS 13ASP 181
C
 HIS 13ASP 181
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1JLJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 28Right-handed alpha
Helix 2
2
A
33 45Right-handed alpha
Helix 3
3
A
62 76Right-handed alpha
Helix 4
4
A
95 104Right-handed alpha
Helix 5
5
A
108 123Right-handed alpha
Helix 6
6
A
124 129Right-handed 310
Helix 7
7
A
147 159Right-handed alpha
Helix 8
8
A
161 170Right-handed alpha
Helix 9
9
A
174 179Right-handed alpha
Helix 10
10
B
23 28Right-handed alpha
Helix 11
11
B
33 45Right-handed alpha
Helix 12
12
B
62 76Right-handed alpha
Helix 13
13
B
95 104Right-handed alpha
Helix 14
14
B
108 123Right-handed alpha
Helix 15
15
B
124 129Right-handed 310
Helix 16
16
B
147 159Right-handed alpha
Helix 17
17
B
161 170Right-handed alpha
Helix 18
18
B
174 179Right-handed alpha
Helix 19
19
C
23 28Right-handed alpha
Helix 20
20
C
33 45Right-handed alpha
Helix 21
21
C
62 76Right-handed alpha
Helix 22
22
C
95 104Right-handed alpha
Helix 23
23
C
108 123Right-handed alpha
Helix 24
24
C
124 129Right-handed 310
Helix 25
25
C
147 159Right-handed alpha
Helix 26
26
C
161 170Right-handed alpha
Helix 27
27
C
174 179Right-handed alpha
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There are 3 sheets in PDB entry 1JLJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 59first strand
Strand 2
A
16 22parallel
Strand 3
A
81 85parallel
Strand 4
A
139 144parallel
Strand 5
A
133 136anti-parallel
Strand 6
A
106 107anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 59first strand
Strand 2
B
16 22parallel
Strand 3
B
81 85parallel
Strand 4
B
139 144parallel
Strand 5
B
133 136anti-parallel
Strand 6
B
106 107anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 59first strand
Strand 2
C
16 22parallel
Strand 3
C
81 85parallel
Strand 4
C
139 144parallel
Strand 5
C
133 136anti-parallel
Strand 6
C
106 107anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il