Analysis of interatomic Contacts of Structural Units in PDB entry:
1JN5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JN5 entry

There are 3 chains in PDB entry 1JN5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4ALA 139
B
 ALA 370PRO 555
C
 PRO 3GLY 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 1JN5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 31Right-handed alpha
Helix 2
2
A
31 36Right-handed alpha
Helix 3
3
A
54 65Right-handed alpha
Helix 4
4
B
380 399Right-handed alpha
Helix 5
5
B
402 408Right-handed 310
Helix 6
6
B
432 437Right-handed alpha
Helix 7
7
B
447 454Right-handed alpha
Helix 8
8
B
458 467Right-handed alpha
Helix 9
9
B
476 479Right-handed 310
Helix 10
10
B
503 507Right-handed 310
Helix 11
11
B
540 549Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1JN5. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
39 47anti-parallel
Strand 3
A
125 135parallel
Strand 4
A
107 118anti-parallel
Strand 5
A
90 99anti-parallel
Strand 6
A
70 79anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
456 457first strand
Strand 2
B
410 419anti-parallel
Strand 3
B
527 538parallel
Strand 4
B
510 521anti-parallel
Strand 5
B
491 501anti-parallel
Strand 6
B
472 474anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
456 457first strand
Strand 2
B
410 419anti-parallel
Strand 3
B
527 538parallel
Strand 4
B
510 521anti-parallel
Strand 5
B
491 501anti-parallel
Strand 6
B
480 486anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il