Analysis of interatomic Contacts of Structural Units in PDB entry:
1JNP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JNP entry

There are 2 chains in PDB entry 1JNP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 8LEU 108
B
 ARG 208LEU 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 1JNP. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
261 266Right-handed alpha
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There are 2 sheets in PDB entry 1JNP. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
26 28anti-parallel
Strand 3
A
33 40anti-parallel
Strand 4
A
46 51anti-parallel
Strand 5
A
103 107anti-parallel
Strand 6
A
89 94anti-parallel
Strand 7
A
82 84anti-parallel
Strand 8
A
74 76anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 222first strand
Strand 2
B
225 227anti-parallel
Strand 3
B
233 239anti-parallel
Strand 4
B
246 251anti-parallel
Strand 5
B
302 307anti-parallel
Strand 6
B
289 297anti-parallel
Strand 7
B
282 284anti-parallel
Strand 8
B
273 276anti-parallel
Strand 9
B
217 222anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il