Analysis of interatomic Contacts of Structural Units in PDB entry:
1JPK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JPK entry

There is 1 chain in PDB entry 1JPK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 10GLN 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1JPK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 24Right-handed alpha
Helix 2
2
A
43 51Right-handed alpha
Helix 3
3
A
52 53Right-handed 310
Helix 4
4
A
54 58Right-handed 310
Helix 5
5
A
61 76Right-handed alpha
Helix 6
6
A
88 94Right-handed alpha
Helix 7
7
A
114 121Right-handed 310
Helix 8
8
A
123 125Right-handed 310
Helix 9
9
A
126 131Right-handed alpha
Helix 10
10
A
131 146Right-handed alpha
Helix 11
11
A
157 168Right-handed alpha
Helix 12
12
A
174 184Right-handed alpha
Helix 13
13
A
184 209Right-handed alpha
Helix 14
14
A
220 224Right-handed 310
Helix 15
15
A
225 233Right-handed alpha
Helix 16
16
A
233 251Right-handed alpha
Helix 17
17
A
265 267Right-handed 310
Helix 18
18
A
268 273Right-handed alpha
Helix 19
19
A
287 296Right-handed alpha
Helix 20
20
A
306 312Right-handed 310
Helix 21
21
A
313 329Right-handed alpha
Helix 22
22
A
346 364Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1JPK.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
151 156parallel
Strand 3
A
213 218parallel
Strand 4
A
258 262parallel
Strand 5
A
279 282parallel
Strand 6
A
300 305parallel
Strand 7
A
333 337parallel
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