Analysis of interatomic Contacts of Structural Units in PDB entry:
1JPS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JPS entry

There are 3 chains in PDB entry 1JPS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 ASP 1GLU 213
H
 GLU 1PRO 217
T
 ASN 5GLY 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1JPS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
79 83Right-handed 310
Helix 2
2
L
121 127Right-handed alpha
Helix 3
3
L
183 187Right-handed alpha
Helix 4
4
H
28 32Right-handed 310
Helix 5
5
H
87 91Right-handed 310
Helix 6
6
H
160 162Right-handed 310
Helix 7
7
H
191 193Right-handed 310
Helix 8
8
H
205 208Right-handed 310
Helix 9
9
T
59 64Right-handed alpha
Helix 10
10
T
101 106Right-handed alpha
Helix 11
11
T
143 148Right-handed alpha
Helix 12
12
T
149 151Right-handed 310
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There are 13 sheets in PDB entry 1JPS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 14first strand
Strand 2
L
102 107parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
97 98anti-parallel
Strand 5
L
84 90anti-parallel
Strand 6
L
33 38anti-parallel
Strand 7
L
45 49anti-parallel
Strand 8
L
53 54anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
114 118first strand
Strand 2
L
129 139anti-parallel
Strand 3
L
173 182anti-parallel
Strand 4
L
159 163anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
153 154first strand
Strand 2
L
145 150anti-parallel
Strand 3
L
191 197anti-parallel
Strand 4
L
205 210anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
111 115parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
104 107anti-parallel
Strand 5
H
92 99anti-parallel
Strand 6
H
33 39anti-parallel
Strand 7
H
45 51anti-parallel
Strand 8
H
58 60anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
124 128first strand
Strand 2
H
139 149anti-parallel
Strand 3
H
180 189anti-parallel
Strand 4
H
167 169anti-parallel
Strand 5
H
180 189anti-parallel
Strand 6
H
173 174anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
155 158first strand
Strand 2
H
199 204anti-parallel
Strand 3
H
209 214anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
10 17first strand
Strand 2
T
20 26anti-parallel
Strand 3
T
56 58anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
46 52first strand
Strand 2
T
32 39anti-parallel
Strand 3
T
72 79anti-parallel
Strand 4
T
93 96anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
113 119first strand
Strand 2
T
122 127anti-parallel
Strand 3
T
174 178anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
131 135first strand
Strand 2
T
140 142anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
166 170first strand
Strand 2
T
152 159anti-parallel
Strand 3
T
185 192anti-parallel
Strand 4
T
208 209anti-parallel
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