Analysis of interatomic Contacts of Structural Units in PDB entry:
1JS3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JS3 entry

There are 2 chains in PDB entry 1JS3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1ALA 476
B
MET 1ALA 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 1JS3. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
2 23Right-handed alpha
Helix 2
2
A
24 27Right-handed 310
Helix 3
3
A
38 42Right-handed 310
Helix 4
4
A
52 63Right-handed alpha
Helix 5
5
A
64 68Right-handed 310
Helix 6
6
A
85 99Right-handed alpha
Helix 7
7
A
104 107Right-handed 310
Helix 8
8
A
108 126Right-handed alpha
Helix 9
9
A
129 133Right-handed 310
Helix 10
10
A
147 171Right-handed alpha
Helix 11
11
A
175 182Right-handed alpha
Helix 12
12
A
192 203Right-handed alpha
Helix 13
13
A
218 232Right-handed alpha
Helix 14
14
A
253 264Right-handed alpha
Helix 15
15
A
274 281Right-handed 310
Helix 16
16
A
284 289Right-handed 310
Helix 17
17
A
290 294Right-handed 310
Helix 18
18
A
300 305Right-handed alpha
Helix 19
19
A
318 324Right-handed alpha
Helix 20
20
A
325 327Right-handed 310
Helix 21
21
A
345 349Right-handed 310
Helix 22
22
A
358 395Right-handed alpha
Helix 23
23
A
416 431Right-handed alpha
Helix 24
24
A
456 476Right-handed alpha
Helix 25
25
B
2 23Right-handed alpha
Helix 26
26
B
24 27Right-handed 310
Helix 27
27
B
38 42Right-handed 310
Helix 28
28
B
52 63Right-handed alpha
Helix 29
29
B
64 68Right-handed 310
Helix 30
30
B
85 99Right-handed alpha
Helix 31
31
B
104 107Right-handed 310
Helix 32
32
B
108 126Right-handed alpha
Helix 33
33
B
129 133Right-handed 310
Helix 34
34
B
147 171Right-handed alpha
Helix 35
35
B
175 182Right-handed alpha
Helix 36
36
B
192 203Right-handed alpha
Helix 37
37
B
218 232Right-handed alpha
Helix 38
38
B
253 264Right-handed alpha
Helix 39
39
B
274 281Right-handed 310
Helix 40
40
B
284 289Right-handed 310
Helix 41
41
B
290 294Right-handed 310
Helix 42
42
B
300 305Right-handed alpha
Helix 43
43
B
318 324Right-handed alpha
Helix 44
44
B
325 327Right-handed 310
Helix 45
45
B
345 349Right-handed 310
Helix 46
46
B
358 395Right-handed alpha
Helix 47
47
B
416 431Right-handed alpha
Helix 48
48
B
456 476Right-handed alpha
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There are 4 sheets in PDB entry 1JS3. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
141 145first strand
Strand 2
A
312 316anti-parallel
Strand 3
A
296 299anti-parallel
Strand 4
A
267 271parallel
Strand 5
A
235 242parallel
Strand 6
A
183 188parallel
Strand 7
A
205 209parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
398 400first strand
Strand 2
A
408 413anti-parallel
Strand 3
A
443 449anti-parallel
Strand 4
A
436 440anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
141 145first strand
Strand 2
B
312 316anti-parallel
Strand 3
B
296 299anti-parallel
Strand 4
B
267 271parallel
Strand 5
B
235 242parallel
Strand 6
B
183 188parallel
Strand 7
B
205 209parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
398 400first strand
Strand 2
B
408 413anti-parallel
Strand 3
B
443 449anti-parallel
Strand 4
B
436 440anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il