Analysis of interatomic Contacts of Structural Units in PDB entry:
1JU6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JU6 entry

There are 4 chains in PDB entry 1JU6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 28VAL 313
B
 HIS 28VAL 313
C
 HIS 28VAL 313
D
 HIS 28VAL 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 1JU6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 43Right-handed alpha
Helix 2
2
A
80 93Right-handed alpha
Helix 3
3
A
97 103Right-handed alpha
Helix 4
4
A
109 114Right-handed alpha
Helix 5
5
A
114 121Right-handed alpha
Helix 6
6
A
134 142Right-handed alpha
Helix 7
7
A
159 171Right-handed alpha
Helix 8
8
A
186 190Right-handed 310
Helix 9
9
A
221 242Right-handed alpha
Helix 10
10
A
261 269Right-handed alpha
Helix 11
11
A
292 294Right-handed 310
Helix 12
12
B
29 44Right-handed alpha
Helix 13
13
B
80 93Right-handed alpha
Helix 14
14
B
97 103Right-handed alpha
Helix 15
15
B
109 114Right-handed alpha
Helix 16
16
B
114 121Right-handed alpha
Helix 17
17
B
134 142Right-handed alpha
Helix 18
18
B
159 171Right-handed alpha
Helix 19
19
B
186 190Right-handed 310
Helix 20
20
B
221 242Right-handed alpha
Helix 21
21
B
261 269Right-handed alpha
Helix 22
22
B
292 294Right-handed 310
Helix 23
23
C
29 44Right-handed alpha
Helix 24
24
C
80 93Right-handed alpha
Helix 25
25
C
97 103Right-handed alpha
Helix 26
26
C
109 114Right-handed alpha
Helix 27
27
C
114 121Right-handed alpha
Helix 28
28
C
134 142Right-handed alpha
Helix 29
29
C
159 171Right-handed alpha
Helix 30
30
C
186 190Right-handed 310
Helix 31
31
C
221 242Right-handed alpha
Helix 32
32
C
261 269Right-handed alpha
Helix 33
33
C
292 294Right-handed 310
Helix 34
34
D
29 44Right-handed alpha
Helix 35
35
D
80 93Right-handed alpha
Helix 36
36
D
97 103Right-handed alpha
Helix 37
37
D
109 114Right-handed alpha
Helix 38
38
D
114 121Right-handed alpha
Helix 39
39
D
134 142Right-handed alpha
Helix 40
40
D
159 171Right-handed alpha
Helix 41
41
D
186 190Right-handed 310
Helix 42
42
D
221 242Right-handed alpha
Helix 43
43
D
261 269Right-handed alpha
Helix 44
44
D
292 294Right-handed 310
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There are 8 sheets in PDB entry 1JU6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
54 66anti-parallel
Strand 3
A
244 258anti-parallel
Strand 4
A
207 218parallel
Strand 5
A
196 204anti-parallel
Strand 6
A
178 180anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 281first strand
Strand 2
A
296 299anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 48first strand
Strand 2
B
54 66anti-parallel
Strand 3
B
244 258anti-parallel
Strand 4
B
207 218parallel
Strand 5
B
196 204anti-parallel
Strand 6
B
178 180anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 281first strand
Strand 2
B
296 299anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 48first strand
Strand 2
C
54 66anti-parallel
Strand 3
C
244 258anti-parallel
Strand 4
C
207 218parallel
Strand 5
C
196 204anti-parallel
Strand 6
C
178 180anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
278 281first strand
Strand 2
C
296 299anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
45 48first strand
Strand 2
D
54 66anti-parallel
Strand 3
D
244 258anti-parallel
Strand 4
D
207 218parallel
Strand 5
D
196 204anti-parallel
Strand 6
D
178 180anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
278 281first strand
Strand 2
D
296 299anti-parallel
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