Analysis of interatomic Contacts of Structural Units in PDB entry:
1JZO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JZO entry

There are 2 chains in PDB entry 1JZO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1GLY 215
B
 ASP 1LYS 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1JZO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 12Right-handed alpha
Helix 2
2
A
62 73Right-handed alpha
Helix 3
3
A
74 78Right-handed 310
Helix 4
4
A
98 107Right-handed alpha
Helix 5
5
A
107 114Right-handed alpha
Helix 6
6
A
130 141Right-handed alpha
Helix 7
7
A
144 154Right-handed alpha
Helix 8
8
A
166 178Right-handed alpha
Helix 9
9
A
198 215Right-handed alpha
Helix 10
10
B
1 11Right-handed alpha
Helix 11
11
B
62 74Right-handed alpha
Helix 12
12
B
75 78Right-handed 310
Helix 13
13
B
98 107Right-handed alpha
Helix 14
14
B
107 114Right-handed alpha
Helix 15
15
B
130 141Right-handed alpha
Helix 16
16
B
144 154Right-handed alpha
Helix 17
17
B
166 178Right-handed alpha
Helix 18
18
B
198 215Right-handed alpha
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There are 4 sheets in PDB entry 1JZO. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 21first strand
Strand 2
A
27 32anti-parallel
Strand 3
A
35 40anti-parallel
Strand 4
A
45 48anti-parallel
Strand 5
B
51 53anti-parallel
Strand 6
B
60 61anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
51 53anti-parallel
Strand 3
B
45 47anti-parallel
Strand 4
B
35 40anti-parallel
Strand 5
B
27 32anti-parallel
Strand 6
B
16 21anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
116 122anti-parallel
Strand 3
A
88 94parallel
Strand 4
A
184 186anti-parallel
Strand 5
A
192 194anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 81first strand
Strand 2
B
116 122anti-parallel
Strand 3
B
88 94parallel
Strand 4
B
184 186anti-parallel
Strand 5
B
192 194anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il