Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 1K2N entry
Note, this PDB entry contains
modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is
treated as heterogroup (ligand) both in the
PDB entry and in LPC/CSU analysis.
There are 3 chains in PDB entry 1K2N
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
|---|
A
|
GLY 573 | LEU 730 |
P
|
GLU 599 | LEU 602 |
P
|
GLN 604 | PRO 607 |
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There is 1
helix in PDB entry 1K2N. Click on helix number for
CSU analysis.
Helix
number
| Helix
ID | Chain
ID |
Initial
residue | Terminal
residue |
Helix class |
|---|
| Helix 1 |
1 | A
| 720 |
729 | Right-handed alpha |
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There are
2 sheets in PDB entry 1K2N. Click on sheet of
interest to get list of strands forming it:
A,
B,
There are 6
strands in A sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 592 |
594 | first strand |
| Strand 2 |
A
| 578 |
582 | anti-parallel |
| Strand 3 |
A
| 689 |
696 | anti-parallel |
| Strand 4 |
A
| 676 |
682 | anti-parallel |
| Strand 5 |
A
| 657 |
659 | anti-parallel |
| Strand 6 |
A
| 662 |
664 | anti-parallel |
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There are 6
strands in B sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 611 |
612 | first strand |
| Strand 2 |
A
| 601 |
604 | parallel |
| Strand 3 |
A
| 623 |
629 | anti-parallel |
| Strand 4 |
A
| 645 |
651 | anti-parallel |
| Strand 5 |
A
| 668 |
671 | anti-parallel |
| Strand 6 |
A
| 717 |
718 | anti-parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il