Analysis of interatomic Contacts of Structural Units in PDB entry:
1K8W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1K8W entry

There are 3 chains in PDB entry 1K8W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 G 401 U 409
B
 C 411 C 422
A
 MET 9TYR 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1K8W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 36Right-handed alpha
Helix 2
2
A
61 65Right-handed 310
Helix 3
3
A
66 71Right-handed alpha
Helix 4
4
A
104 114Right-handed alpha
Helix 5
5
A
136 142Right-handed alpha
Helix 6
6
A
179 191Right-handed alpha
Helix 7
7
A
209 213Right-handed 310
Helix 8
8
A
216 229Right-handed alpha
Helix 9
9
A
233 238Right-handed alpha
Helix 10
10
A
239 241Right-handed 310
Helix 11
11
A
245 249Right-handed 310
Helix 12
12
A
257 265Right-handed alpha
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There are 5 sheets in PDB entry 1K8W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 121first strand
Strand 2
A
151 164anti-parallel
Strand 3
A
167 174anti-parallel
Strand 4
A
74 82anti-parallel
Strand 5
A
195 205anti-parallel
Strand 6
A
52 59parallel
Strand 7
A
13 19anti-parallel
Strand 8
A
214 215parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 121first strand
Strand 2
A
151 164anti-parallel
Strand 3
A
167 174anti-parallel
Strand 4
A
74 82anti-parallel
Strand 5
A
195 205anti-parallel
Strand 6
A
52 59parallel
Strand 7
A
41 43anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
95 98anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
134 135anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 256first strand
Strand 2
A
280 285parallel
Strand 3
A
290 297anti-parallel
Strand 4
A
303 308anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il