Analysis of interatomic Contacts of Structural Units in PDB entry:
1KJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KJY entry

There are 4 chains in PDB entry 1KJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 30LYS 349
B
 ASP 496LEU 530
C
 GLY 1030ASN 1347
D
 ASP 1496PHE 1529
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 1KJY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 58Right-handed alpha
Helix 2
2
A
62 67Right-handed alpha
Helix 3
3
A
69 91Right-handed alpha
Helix 4
4
A
99 112Right-handed alpha
Helix 5
5
A
120 133Right-handed alpha
Helix 6
6
A
133 141Right-handed alpha
Helix 7
7
A
142 146Right-handed 310
Helix 8
8
A
151 158Right-handed alpha
Helix 9
9
A
158 164Right-handed alpha
Helix 10
10
A
170 176Right-handed alpha
Helix 11
11
A
207 216Right-handed alpha
Helix 12
12
A
228 232Right-handed 310
Helix 13
13
A
241 255Right-handed alpha
Helix 14
14
A
256 260Right-handed 310
Helix 15
15
A
270 279Right-handed alpha
Helix 16
16
A
282 286Right-handed 310
Helix 17
17
A
295 309Right-handed alpha
Helix 18
18
A
328 347Right-handed alpha
Helix 19
19
B
496 506Right-handed alpha
Helix 20
20
B
509 514Right-handed 310
Helix 21
21
B
520 525Right-handed 310
Helix 22
22
C
1045 1057Right-handed alpha
Helix 23
23
C
1062 1067Right-handed alpha
Helix 24
24
C
1069 1091Right-handed alpha
Helix 25
25
C
1099 1114Right-handed alpha
Helix 26
26
C
1120 1133Right-handed alpha
Helix 27
27
C
1133 1141Right-handed alpha
Helix 28
28
C
1142 1146Right-handed 310
Helix 29
29
C
1151 1157Right-handed alpha
Helix 30
30
C
1158 1163Right-handed alpha
Helix 31
31
C
1170 1177Right-handed alpha
Helix 32
32
C
1207 1216Right-handed alpha
Helix 33
33
C
1228 1232Right-handed 310
Helix 34
34
C
1241 1256Right-handed alpha
Helix 35
35
C
1257 1260Right-handed 310
Helix 36
36
C
1270 1278Right-handed alpha
Helix 37
37
C
1282 1286Right-handed 310
Helix 38
38
C
1295 1309Right-handed alpha
Helix 39
39
C
1328 1346Right-handed alpha
Helix 40
40
D
1496 1508Right-handed alpha
Helix 41
41
D
1520 1525Right-handed 310
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There are 2 sheets in PDB entry 1KJY. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 191first strand
Strand 2
A
194 200anti-parallel
Strand 3
A
33 39parallel
Strand 4
A
220 226parallel
Strand 5
A
263 269parallel
Strand 6
A
319 323parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1185 1191first strand
Strand 2
C
1194 1200anti-parallel
Strand 3
C
1033 1039parallel
Strand 4
C
1220 1226parallel
Strand 5
C
1265 1269parallel
Strand 6
C
1320 1323parallel
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