Analysis of interatomic Contacts of Structural Units in PDB entry:
1KK8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KK8 entry

There are 3 chains in PDB entry 1KK8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 837
B
 PRO 13SER 151
C
 PRO 1PRO 154
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 1KK8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 11Right-handed 310
Helix 2
2
A
72 74Right-handed 310
Helix 3
3
A
79 83Right-handed 310
Helix 4
4
A
87 91Right-handed 310
Helix 5
5
A
95 109Right-handed alpha
Helix 6
6
A
133 141Right-handed alpha
Helix 7
7
A
144 148Right-handed 310
Helix 8
8
A
151 167Right-handed alpha
Helix 9
9
A
181 197Right-handed alpha
Helix 10
10
A
214 230Right-handed alpha
Helix 11
11
A
268 273Right-handed 310
Helix 12
12
A
282 289Right-handed alpha
Helix 13
13
A
293 295Right-handed 310
Helix 14
14
A
296 301Right-handed alpha
Helix 15
15
A
305 309Right-handed 310
Helix 16
16
A
323 338Right-handed alpha
Helix 17
17
A
341 359Right-handed alpha
Helix 18
18
A
377 388Right-handed alpha
Helix 19
19
A
390 400Right-handed alpha
Helix 20
20
A
415 447Right-handed alpha
Helix 21
21
A
471 503Right-handed alpha
Helix 22
22
A
513 525Right-handed alpha
Helix 23
23
A
528 537Right-handed alpha
Helix 24
24
A
543 556Right-handed alpha
Helix 25
25
A
593 599Right-handed alpha
Helix 26
26
A
603 612Right-handed alpha
Helix 27
27
A
615 622Right-handed alpha
Helix 28
28
A
644 661Right-handed alpha
Helix 29
29
A
683 692Right-handed alpha
Helix 30
30
A
713 721Right-handed alpha
Helix 31
31
A
722 728Right-handed 310
Helix 32
32
A
734 747Right-handed alpha
Helix 33
33
A
749 751Right-handed 310
Helix 34
34
A
765 823Right-handed alpha
Helix 35
35
A
824 834Right-handed alpha
Helix 36
36
A
835 837Right-handed 310
Helix 37
37
B
14 28Right-handed alpha
Helix 38
38
B
36 48Right-handed alpha
Helix 39
39
B
52 62Right-handed alpha
Helix 40
40
B
68 78Right-handed alpha
Helix 41
41
B
85 95Right-handed alpha
Helix 42
42
B
106 116Right-handed alpha
Helix 43
43
B
121 130Right-handed alpha
Helix 44
44
B
140 149Right-handed alpha
Helix 45
45
C
4 22Right-handed alpha
Helix 46
46
C
32 40Right-handed alpha
Helix 47
47
C
45 52Right-handed alpha
Helix 48
48
C
64 76Right-handed alpha
Helix 49
49
C
82 92Right-handed alpha
Helix 50
50
C
103 113Right-handed alpha
Helix 51
51
C
118 130Right-handed alpha
Helix 52
52
C
141 151Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 1KK8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 70first strand
Strand 2
A
55 60anti-parallel
Strand 3
A
42 52anti-parallel
Strand 4
A
33 38anti-parallel
Strand 5
A
75 76anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 116first strand
Strand 2
A
119 123anti-parallel
Strand 3
A
663 671parallel
Strand 4
A
169 175parallel
Strand 5
A
454 460parallel
Strand 6
A
244 251anti-parallel
Strand 7
A
257 265anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
240 241anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 364first strand
Strand 2
A
373 374anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 403first strand
Strand 2
A
410 411anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 563first strand
Strand 2
A
578 582anti-parallel
Strand 3
A
585 589anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
709 712first strand
Strand 2
A
759 762anti-parallel
Strand 3
A
753 755anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
B
138 139anti-parallel
Strand 3
B
134 135anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 29first strand
Strand 2
C
62 63anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 102first strand
Strand 2
C
138 140anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il